1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGAGACTTGGGATATGCATCAGAGCTTGGAAACTATGCAGAGTATAGTGGTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaacattgtaaccttgtcaatgctgctcttaactccaccttaggaccatcatctggttgggacaatgttaggatcatctgctaaccatacaattaaatgtag
species | Zea mays |
transcript | GRMZM2G107082_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCAACTGCTGAEST: gi|211099628|gb|FL031896.1|FL031896
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGA
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|6851489|gb|AW352499.1|AW352499
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCAACTGCTGACCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|60357576|gb|DN224549.1|DN224549
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|4966766|gb|AI691622.1|AI691622
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCANCTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|60352571|gb|DN219544.1|DN219544
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|60354935|gb|DN221908.1|DN221908
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|148953531|gb|EE153040.2|EE153040
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|211099629|gb|FL031897.1|FL031897
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|13177932|gb|BG349115.1|BG349115
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|60398717|gb|DN231533.1|DN231533
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|113703225|gb|EE680729.1|EE680729
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|32851220|gb|CD990901.1|CD990901
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCAACTGCTGACCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|13177931|gb|BG349114.1|BG349114
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|5922366|gb|AW055655.1|AW055655
genomic: GAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|4827542|gb|AI668234.1|AI668234
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|211182330|gb|FL049127.1|FL049127
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTKCAACTGCTGATCCTGATGGCCGCAAGAKAGCCCTTCTCATTGGAGGTEST: gi|5871775|gb|AW018246.1|AW018246
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCAACTGCTGACCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|211123624|gb|FL002523.1|FL002523
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: TGCTCCTAATGAGGGAG-AGGGTCTGAATTATNCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCG-AAGAGAAGCCCTTCTCATTGGAGGEST: gi|60401566|gb|DN234373.1|DN234373
genomic: TGCTCCTAATGAGG-AGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGA-GCCCTTCTCATTGGAGG
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|78024963|gb|DV493350.1|DV493350
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|50332311|gb|CO527437.1|CO527437
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|6012698|gb|AW062135.1|AW062135
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTACTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAG-TEST: gi|16378083|gb|BI992269.1|BI992269
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|60395413|gb|DN228283.1|DN228283
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|211420152|gb|FL463211.1|FL463211
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|211481515|gb|FL480068.1|FL480068
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|113703355|gb|EE680859.1|EE680859
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTEST: gi|211182333|gb|FL049130.1|FL049130
genomic: GTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
EST: TTCTAGAGTTGTTCTTGAT TGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
genomic: TTCTAGAGTTGTTCTTGATgtaagcaaac ... ttaaatgtagTGTGCAACTGCTGATCCTGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGACTTGGGATATGCATCAGAGCTTGGAAACTATGCAGAGTATAGTGGTGCTCCTAATGAGGAGGAGGTTCTGAATTATTCTAGAGTTGTTCTTGATgtaagcaaacattgtaaccttgtcaatgctgctcttaactccaccttaggaccatcatctggttgggacaatgttaggatcatctgctaaccatacaattaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG