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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAATTACGTTAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAAAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCACCATTTTATACTTGAGgtatgcatgtgttcaccactgggaatgtggtattgctgagagtttgacatcagtggcattttctttgtataacctgtttgagtctgtattaatcaagtctgtaattggcag

Basic information

species Zea mays
transcript GRMZM2G106531_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106531_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 5'ss of exon 8
AAAGAATTACGTTAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAAAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCACCATTTTATACTTGAGgtatgcatgtgttcaccactgggaatgtggtattgctgagagtttgacatcagtggcattttctttgtataacctgtttgagtctgtattaatcaagtc-----tgtaattggcag
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||  ||||| |||||||||||| ||||||||||| | |||  | |||   |||| ||  | |||  | |  | |  |    || ||  |  ||  |   | |||  |||| ||||  || |||   | |      |  ||||| |||
AAAGAATTATGTTAAAGCACCATCATTCCTTTCCATTCATATGGGTGTCAAAGCCTCAGTTTTGCCTGCTGATACTGATTGCCACCATTTTGTACTTGAGgtaggtatgactccactg-tgggtatcagatatcacaggcaatgggtacacaatgctaagttggt-acacaaca-gttttagtccataataacttaattctaattacaattgccag

upper sequence: GRMZM2G106531_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 8
AAAGAATTACGTTAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAAAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCACCATTTTATACTTGAGgtatgcatgtgttcaccactgggaa-tgtggtattgctgagagtttgaca--tcagtggc-attttctttgtataacctgtttgagtctgtattaatcaagtctgtaattggcag
 ||    ||||| ||||| |||||||| ||||||||||| |||||||| |||||    ||||| ||| | |  || || ||||| |||||| | || ||||| || ||  |||  | |||  ||  | |    ||||   |  | |      | | | || | |||| || |    | |   |                                
GAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAAAGCAGAGGTTCTCCCTCCAGATACAGATTGCCATCATTTTGTGCTCGAGgtttg-ata-gtttcctactaagatctattcacttgccaggtttatagttattgaatagcgactttcgttttgctgcatccgtag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481285|gb|EY254207.1|EY254207
EST:     AAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCACCATTTTATACTTGAG                         GATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTAAGTATC
genomic: AAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCACCATTTTATACTTGAGgtatgcatgt ... taattggcagGATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTAAGTATC