1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAACGAGTGGGTGGTGACGGCGAAGCTCGGCAGCGCCATGAAGATGAAATCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatatgaagcaattaaaatctactgtttccctttcccccaccgccaccggatgctattcccttcaagtcccgcgactaatttccagcgacatgatgcag
species | Zea mays |
transcript | GRMZM2G105631_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTGEST: gi|93284005|gb|EB676269.1|EB676269
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTGEST: gi|60336764|gb|DN203737.1|DN203737
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTGEST: gi|29544715|gb|CB605095.1|CB605095
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTGEST: gi|78110271|gb|DV528686.1|DV528686
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTGEST: gi|76292862|gb|DV032430.1|DV032430
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTGEST: gi|29167909|gb|CB411169.1|CB411169
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGEST: gi|15427286|gb|BI543108.1|BI543108
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTGEST: gi|71761578|gb|DR959515.1|DR959515
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTGEST: gi|71330488|gb|DR802010.1|DR802010
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGEST: gi|116829022|gb|EC863362.1|EC863362
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTG
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTEST: gi|71298388|gb|DR785175.1|DR785175
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCT
EST: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACGAGTGGGTGGTGACGGCGAAGCTCGGCAGCGCCATGAAGATGAAATCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatatgaagcaattaaaatctactgtttccctttcccccaccgccaccggatgctattcccttcaagtcccgcgactaatttccagcgacatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT