1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAGgtttgatgaagatcctcacttatatatgtatcgatcttattgctagaacttgggtttatcgaatatgaatggggtttcatgatttgtgtctgcatcag
species | Zea mays |
transcript | GRMZM2G105019_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGGCGAAAAAAGACTGGGATAAACT-GAGAGCTGAAGTCAAAAAGGAG GAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGTEST: gi|67031272|gb|CO460021.1|CO460021
genomic: AAAGGCGAAAAAAGACTGGGATAAACTGGA-AGCTGAAGTCAAAAAGGAGgtttgatgaa ... tctgcatcagGAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGT
EST: CAAAGGCGAAAAAAGACTGGGATAAACTGGGAGCTGAAGTCAAAAAGGAG GAGAAGGAAGAANNNACT-GATGGTGATGCTGCATTGAACAANTTNCT-C-EST: gi|5005807|gb|AI711869.1|AI711869
genomic: CAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAGgtttgatgaa ... tctgcatcagGAGAAGGAAGAAAA-ACTTGATGGTGATGCTGCATTGAACAAATT-CTTCC
EST: CAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAG GAGAAGGAAGAAAEST: gi|113681984|gb|DW840964.1|DW840964
genomic: CAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAGgtttgatgaa ... tctgcatcagGAGAAGGAAGAAA
EST: CTGAAGTCAAAAAGGAG GTAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGEST: gi|8383133|gb|BE056076.1|BE056076
genomic: CTGAAGTCAAAAAGGAGgtttgatgaa ... tctgcatcagG-AGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCG
EST: CAAAGGCGAAAAAAGACTGGGATTAACTGGAAGCTGAAGTCAAAAAGGAG GAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGTEST: gi|6056546|gb|AW090936.1|AW090936
genomic: CAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAGgtttgatgaa ... tctgcatcagGAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGT
EST: CAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAG GAGAAGGAAGAEST: gi|6031470|gb|AW076372.1|AW076372
genomic: CAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAGgtttgatgaa ... tctgcatcagGAGAAGGAAGA
EST: CATAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAG GAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGTEST: gi|32857112|gb|CD996793.1|CD996793
genomic: CAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAGgtttgatgaa ... tctgcatcagGAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGT
EST: GACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAG GAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGT
genomic: GACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAGgtttgatgaa ... tctgcatcagGAGAAGGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAGgtttgatgaagatcctcacttatatatgtatcgatcttattgctagaacttgggtttatcgaatatgaatggggtttcatgatttgtgtctgcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG