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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaacaagtctctcgagcccttagaataaacattttagcattttctcaaatgccattgtttcttgtag

Basic information

species Zea mays
transcript GRMZM2G104418_T01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050181|gb|EB160599.1|EB160599
EST:     TCCGAGTTGTCCACTGTATTTTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|76933749|gb|DV173572.1|DV173572
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|71307229|gb|DR789781.1|DR789781
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|76012012|gb|DT939182.1|DT939182
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|5922431|gb|AW055720.1|AW055720
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTGCTGATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|78123325|gb|DV541709.1|DV541709
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|211181860|gb|FL474506.1|FL474506
EST:     TACTCATGGCATGGGG                         GTTTAMCAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|60347811|gb|DN214784.1|DN214784
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|31361649|gb|CD446006.1|CD446006
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|67015522|gb|CO444271.1|CO444271
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|67025519|gb|CO454268.1|CO454268
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|76292035|gb|DV031603.1|DV031603
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|211366578|gb|FK956887.1|FK956887
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTT
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTT
EST: gi|76283841|gb|DV023409.1|DV023409
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|94475015|gb|EB703973.1|EB703973
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|94480097|gb|EB709055.1|EB709055
EST:     TCCGAGTTGTCCACTGTATTTTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|91050182|gb|EB160600.1|EB160600
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|76283840|gb|DV023408.1|DV023408
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|211181861|gb|FL474507.1|FL474507
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGGCATCATCGTCTTCATATTTGC
EST: gi|211149407|gb|FL321987.1|FL321987
EST:     TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG                         GTTTWACAATGTCATCATCCTTATTATTGG
genomic: TCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGGgtaagcaaac ... tttcttgtagGTTTAACAATGTCATCATCCTTATTATTGG