1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaaacggagagagaaaaaatggcatgctgttggatcagcaaaggatctctctctctttatctggctgcgctgcgcctgtgctccgctccatgaaaaatctgcactcttggttggtagtag
species | Zea mays |
transcript | GRMZM2G103546_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGCGATGGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG GTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCGEST: gi|148972862|gb|EE023861.2|EE023861
genomic: CGCGAT-GATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaa ... ttggtagtagGTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCG
EST: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG GTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCGEST: gi|78110408|gb|DV528820.1|DV528820
genomic: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaa ... ttggtagtagGTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCG
EST: CCGCGATGAGGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG GTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCGEST: gi|94476507|gb|EB705465.1|EB705465
genomic: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaa ... ttggtagtagGTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCG
EST: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG GTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCGEST: gi|110951590|gb|EE171642.1|EE171642
genomic: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaa ... ttggtagtagGTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCG
EST: TTCGGGCCGCTGCTTCCCATAATCACG GTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCGEST: gi|71439164|gb|DR820214.1|DR820214
genomic: TTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaa ... ttggtagtagGTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCG
EST: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG GTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCGEST: gi|89760410|gb|DY688829.1|DY688829
genomic: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaa ... ttggtagtagGTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCG
EST: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG GTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCG
genomic: CCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaa ... ttggtagtagGTGGACAAGATCGGCGAGAGCTTCGCTGTGATCAACTCCATGCCCAAGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACGgtacggaaaaacggagagagaaaaaatggcatgctgttggatcagcaaaggatctctctctctttatctggctgcgctgcgcctgtgctccgctccatgaaaaatctgcactcttggttggtagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT