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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATATGCAGAACAATCAGTTAACAGGTTCTGTCAATGTTCTCCGTGGGCTAAGCCTTACTACATTgtaagtgaattgtcagacaatagtttgacttatattcatgcttgcttgataactaataactgttttaaacag

Basic information

species Zea mays
transcript GRMZM2G103070_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103070_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g09740.1 (Oryza sativa), 5'ss of exon 8
TTATATGCAGAACAATCAGTTAACAGGTTCTGTCAATGTTCTCCGTGGGCTAAGCCTTACTACATTgtaagtgaattgt-cagacaatagtttgacttatattcatgcttgcttgataactaataactgt-----tttaaacag
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TTATATGCAAAACAATCAATTAACAGGTTCTGTCAATGTTCTCAGTGGTCTAAGCCTCACAACACTgtaagcgagtttttcagacaacaaattgactgctatgc-tgcttgcttaataactgagatttccttctcttcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91868538|gb|EB400066.1|EB400066
EST:     CAGTTAACAGGTTCTGTCAATGTTCTCCGTGGGCTAAGCCTTACTACATT                         AAACATAGCAAACAACAATTTCAGTGGTTGGATACCAAAAGAATTCAGCTC
genomic: CAGTTAACAGGTTCTGTCAATGTTCTCCGTGGGCTAAGCCTTACTACATTgtaagtgaat ... ttttaaacagAAACATAGCAAACAACAATTTCAGTGGTTGGATACCAAAAGAATTCAGCTC
EST: gi|148960881|gb|EE011562.2|EE011562
EST:     CAGTTAACAGGTTCTGTCAATGTTCTCCGTGGGCTAAGCCTTACTACATT                         AAACATAGCAAACAACAATTTCAGTGGCTGGATACCAAAAGAATTCAGCTC
genomic: CAGTTAACAGGTTCTGTCAATGTTCTCCGTGGGCTAAGCCTTACTACATTgtaagtgaat ... ttttaaacagAAACATAGCAAACAACAATTTCAGTGGTTGGATACCAAAAGAATTCAGCTC