Sequence
atgc intronic sequence ATGC exonic sequenceCGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcacttaaagctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g49520.1 (Oryza sativa), 5'ss of exon 8
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcacttaaagctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag
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TGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGgtcgctttacttctttgcatcattctgcaccttttttta--tccatgaatggggtccctttttgtttcctttt---gttgtgccactt-----tgcaatatttttatctg-------------------------------------
upper sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g49520.2 (Oryza sativa), 5'ss of exon 8
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcactta--aagctgtttcaca-tgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag
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TGCTGCGTGCTCGAGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTATACATGCAGTGGGCTGAGCATCACAAAAAGCTGTCCAATTTCTTAAGgtcgctttacttctttgcatcattctgcaccttttttta--tccatgaatggggtccctttttgtttccttttgttgtgccactttgcaatatttttatctgtatttatcttactctttt-atgaactggtc--ttattgtgtgctgcag
upper sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G05410.5 (Glycine max), 5'ss of exon 8
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaa---ctttgctgctttgcatcaat------cttcacttta-acttagaccc----aaaacttggaatcc-tcattttcttcacttaaagctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag---------------------------------
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CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgc---tctgcaggttatttttaattt-tggtccaaaagtgtccatattcac-attttattcagacgaagataagtttctgttcatgtgaattgtag
upper sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G05410.4 (Glycine max), 5'ss of exon 8
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcacttaaag-ctgtttcacatgtttatgtagtaat--tctactctctcgtttgatggatctgttattttctgtgttctgcag
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CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgt----ttgcccttt----tcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgat-atcaaataatgctctgctctgcag---------------------------------
upper sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G19640.2 (Glycine max), 5'ss of exon 8
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcacttaaagctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag
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CTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAGgt----ttgcc-cttttcaactgtaagctaatgggcctgagtctatagct-agtcccttcaagaactggacat----ctattatatctgat-atcaaataatgctatgctctgcag-------------------------------
upper sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G05410.1 (Glycine max), 5'ss of exon 8
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcacttaaag-ctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag
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CTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAAGgt----ttgcccttt----tcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgat-atcaaataatgctctg---------------------------------------
upper sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G19640.1 (Glycine max), 5'ss of exon 8
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcacttaaagctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag
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CTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAGgt----ttgcc-cttttcaactgtaagctaatgggcctgagtctatagct-agtcccttcaagaactggacat----ctattatatctgat-atcaaataatgctatgctc------------------------------------
upper sequence: GRMZM2G102475_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv12s0055g00360.t01 (Vitis vinifera), 5'ss of exon 8
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcacttaaagctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag
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CTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAAGgcacattctttgact---atttatttccgtgtt--ctggcatttca---tttctcccatcaacctttttgtcttgtaccctctttgatggttaagctgtgtttatttctgcaatggctcttaacatgtgcttctttgc-ctgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31349518|gb|CD433875.1|CD433875EST: TTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAG GTTATTTTTATTTCTGGTCCAAAAGTGTCCATATTGACAATTAAATTGAGG
genomic: TTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgc ... tgttctgcagGTTATTTTTATTTCTGGTCCAAAAGTGTCCATATTGACAATTAAATTGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAAGgtaactttgctgctttgcatcaatcttcactttaacttagacccaaaacttggaatcctcattttcttcacttaaagctgtttcacatgtttatgtagtaattctactctctcgtttgatggatctgttattttctgtgttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA