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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCACCATATTAGGATGTGATATCTGTGCCAATGACTTCGAAATTTGCAGGAAACAATGAATGGGGACGTATGATGTTGAATCAAACATTTACTATAGgtacacctttccacagcttgcccgtgttctattaacctgtgattaaaattgctgctctttttctattgacctgtgattaaaatttcacactgtggaacct...

Basic information

species Zea mays
transcript GRMZM2G101438_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101438_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g52420.2 (Oryza sativa), 5'ss of exon 9
TCTGCACCATATTAGGATGTGATATCTGTGCCAATGACTTCGAAATTTGCAGGAAACAATGAATGGGGACGTATGATGTTGAATCAAACATTTACTATAGgtacacctttccacagcttgcccgtgttctattaacctgtgattaaaattgctgctctttttctattgacctgtgattaaaatttcacactgtggaacct----
                                                    |||||||||||||||| |||||||  ||||| |||||||||||||||||||||  ||||||  |  ||| | |    |  | |  | |  |   || |  ||    |      |  |  | | | || |  |  |  ||  | || ||    
----------------------------------------------------GAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGgtacatgtttccaatg--tgcacatagcatggttattttttctaccaacttgtgactgtgacacgtataattataactatacct--attctccgaaatctattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211033592|gb|FL452207.1|FL452207
EST:     AGGAAACAATGAATGGGGACGTATGATGTTGAATCAAACATTTACTATAG                         AGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACT
genomic: AGGAAACAATGAATGGGGACGTATGATGTTGAATCAAACATTTACTATAGgtacaccttt ... atgtcatcagAGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACT