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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCAAGCTTTACCGAGCATGTCCCTTATTGCTTCAGACTTCAGCTATCTTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtgagtgtcctggcagactgcgattttattaagcatgcaaagctttattttttttaactactacatttctccaactaggctgcgaaggctacttattatt...

Basic information

species Zea mays
transcript GRMZM2G101217_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101217_T07 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g68390.1 (Oryza sativa), 5'ss of exon 10
ACATCAAGCTTTACCGAGCATGTCCCTTATTGCTTCAGACTTCAGCTATCTTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtg--agtgtcctggcagactgcgattttattaagcatgcaaagctttattttttttaactactacatt---tctccaactaggctgcgaaggctacttattatt
|||||||||||| || |||||||||||||| |||||||| |||||||||||||| || || || |||||||| || || |||||||||||||| |||||||||  |    | |  | ||||     |   ||   |   ||| ||   |||| | |     ||  | ||     |    |  |  |||                 
ACATCAAGCTTTGCCAAGCATGTCCCTTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCATTGGTTTCTTCAAAGgtgacaagaccttcactgacttttggtgcgtttttccaacaaggca--atttctctaggacacctcgttgatgttgtgtcctgcttgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352980|gb|DN219953.1|DN219953
EST:     ACAGGGCTCCATTGGTTTCATCAAAG                         AAGGAATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
genomic: ACAGGGCTCCATTGGTTTCATCAAAGgtgagtgtcc ... gccattgtagAAGG-ATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
EST: gi|211301901|gb|FL443563.1|FL443563
EST:     TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAG                         AACGATGGAAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
genomic: TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtgagtgtcc ... gccattgtagAAGGATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
EST: gi|50337134|gb|CO532260.1|CO532260
EST:     TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAG                         AAGGATGGGAAGACATCAGATCATCGCAACTAC-TTGATGCTCAG
genomic: TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtgagtgtcc ... gccattgtagAAGGATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
EST: gi|76910426|gb|DV163864.1|DV163864
EST:     TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAG                         AAGGATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
genomic: TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtgagtgtcc ... gccattgtagAAGGATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
EST: gi|50325601|gb|CO520727.1|CO520727
EST:     TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAG                         AAGGATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
genomic: TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtgagtgtcc ... gccattgtagAAGGATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
EST: gi|50336105|gb|CO531231.1|CO531231
EST:     TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAG                         AAGGATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG
genomic: TTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtgagtgtcc ... gccattgtagAAGGATGGGAAGACATCAGATCATCGCAACTACTTTGATGCTCAG