1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAGgttagtgatgtaattctagcttccaacaaaaatcggtcaatatctttgacatggcaaacggtcttccttttataaacttcagttcaaataatcttcctat...
species | Zea mays |
transcript | GRMZM2G100484_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTEST: gi|22545627|gb|BU097986.1|BU097986
genomic: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAGgttagtgatg ... atacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
EST: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTEST: gi|26457048|gb|CA828631.1|CA828631
genomic: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAGgttagtgatg ... atacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
EST: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTEST: gi|211271038|gb|FL034395.1|FL034395
genomic: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAGgttagtgatg ... atacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
EST: GAGCAGAGGCATTGGGTGGCAG GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
genomic: GAGCAGAGGCATTGGGTGGCAGgttagtgatg ... atacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAGgttagtgatgtaattctagcttccaacaaaaatcggtcaatatctttgacatggcaaacggtcttccttttataaacttcagttcaaataatcttcctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG