1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACGGATGTCTACGCCTTTGGGATTGTTCTTTTCCAGCTGATATCTGGTCGAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGGgtattattcatagtgaattctgcttatacttctgtttatatacttacaagttacaatacatccgcacggtccaatttcaatttccaatacgtcaacaaaaatttcag
species | Zea mays |
transcript | GRMZM2G100454_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGG GCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGCEST: gi|76910149|gb|DV163727.1|DV163727
genomic: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGGgtattattca ... aaaatttcagGCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGC
EST: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGG GCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGCEST: gi|32930838|gb|CF035650.1|CF035650
genomic: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGGgtattattca ... aaaatttcagGCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGC
EST: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGG GCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGCEST: gi|42491831|gb|CK700877.1|CK700877
genomic: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGGgtattattca ... aaaatttcagGCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGC
EST: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACNCATATATTGCAATGG GCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGCEST: gi|40287084|gb|CK327476.1|CK327476
genomic: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGGgtattattca ... aaaatttcagGCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGC
EST: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGG GCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGC
genomic: GAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGGgtattattca ... aaaatttcagGCAGAGCCATTGGTCGAAAGCCTTGCACTTCACGAACTAATTGATGATCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGGATGTCTACGCCTTTGGGATTGTTCTTTTCCAGCTGATATCTGGTCGAAAGGTGCTTGATGACCATGGAGGGCAGTGCACACATATATTGCAATGGgtattattcatagtgaattctgcttatacttctgtttatatacttacaagttacaatacatccgcacggtccaatttcaatttccaatacgtcaacaaaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG