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CTTTGTTGTTGCTGTGGAGAATAGTTACCCAGGAACAAAATTTGACCCTGTACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacgtctagcagaaccttattgcatatttgcttatgattgccatgcgtaggcaacatcatacatagaagtatgaaaaaatgagactgtatattc...
species | Zea mays |
transcript | GRMZM2G099452_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGGEST: gi|61118150|gb|DN559111.1|DN559111
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAATAGATTGGGCTGGAAGGEST: gi|86472826|gb|DY239196.1|DY239196
genomic: TCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGGTGGAAGGEST: gi|211288258|gb|FL396091.1|FL396091
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|31355042|gb|CD439399.1|CD439399
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|60358693|gb|DN225666.1|DN225666
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|60358392|gb|DN225365.1|DN225365
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|149033083|gb|EE154985.2|EE154985
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|31357749|gb|CD442106.1|CD442106
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATGCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|61118149|gb|DN559110.1|DN559110
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|211319661|gb|FL415870.1|FL415870
genomic: TCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|31611998|gb|CD568620.1|CD568620
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|211102292|gb|FL386878.1|FL386878
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGGEST: gi|19351725|gb|BM896257.1|BM896257
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCEST: gi|19351594|gb|BM896126.1|BM896126
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACC
EST: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAG GATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
genomic: TACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacg ... gttcttgtagGATCTTATAGACTACTACAATTCTTCCACCGTAAGAGATTGGGCTGGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGTTGTTGCTGTGGAGAATAGTTACCCAGGAACAAAATTTGACCCTGTACCAGTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACCGAGgtattatacgtctagcagaaccttattgcatatttgcttatgattgccatgcgtaggcaacatcatacatagaagtatgaaaaaatgagactgtatattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaaa