Sequence
atgc intronic sequence ATGC exonic sequenceGCAAGGATGAATATGATGGATGAGTGCGAGGCTTCTCTACAAGTTCTGAGGGGGGTGGACGCTGACATCACTGTAGAAGCGAATGATATAAAGgcacgcacctgcttccactcatctagaatggatggatacagcttatttgaaaacagtcttcactctgtatcattactactatttccttcaacatttggtgcatggctccatgtgcttcattcttgtggaatcggaggtgggatcaactttttaattttatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G098679_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 8
GCAAGGATGAATATGATGGATGAGTGCGAGGCTTCTCTACAAGTTCTGAGGGGGGTGGACGCTGACATCACTGTAGAAGCGAATGATATAAAGgcacgcacctgcttccactcatctagaatggatggatacagcttatttgaaaacagtcttcactctgtatcattactactatttcc--ttcaacatttggtgcatggctccatgtgctt-cattcttgtggaatcggaggtgggatcaactttttaattttatgcag
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GCAAAAATGAAAATGATGGATGATTTTGAGGCTTCTCTACAAGTTTTGAGGGGGTTTGAGACTGATATTACTGCAGAAgtgaatgatataaaggcaagcaa----ttttatttttcttgattaactgactacaagttatttgcggtttcgcgtgatttcatcttagtaagattttcactaacacaacacttgggagat------atgtactttcatttttctggaagactaatatggttcaaatccctg---ttatgcag
upper sequence: GRMZM2G098679_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 8
GCAAGGATGAATATGATGGATGAGTGCGAGGCTTCTCTACAAGTTCTGAGGGGGGTGGACGCTGACATCACTGTAGAAGCGAATGATATAAAGgcacgcacctgcttccactcatctagaatggatggatacagcttatttgaaaacagtcttcactctgtatcattactactatttccttcaacatttggtgcatggctccatgtgcttcattcttgtggaatcggaggtgggatcaactttttaattttatgcag
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GCAAAGATGAACATGATGGATGATTTTGAGACTTCTTTACAAGTTCTGAGGGGATTTGAGACTGACATCAGCGCGGAAGTGAATGATATAAAGgtaagcacttgttataacattgagcacactgatatatgcaccacaat--accacatgcttctggaagtaacagcatcatc--tttatgcag-------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149102088|gb|EE188063.2|EE188063EST: TTCTGAGGGGGGTGGACGCTGACATCACTGTAGAAGCGAATGATATAAAG ATAGCTGTAGCATCGGCAAACAAAAGTGGTGCAATGAGCTTTCAAGAGTTG
genomic: TTCTGAGGGGGGTGGACGCTGACATCACTGTAGAAGCGAATGATATAAAGgcacgcacct ... ttttatgcagATAGCTGTAGCATCGGCAAACAAAAGTGGTGCAATGAGCTTTCAAGAGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAGGATGAATATGATGGATGAGTGCGAGGCTTCTCTACAAGTTCTGAGGGGGGTGGACGCTGACATCACTGTAGAAGCGAATGATATAAAGgcacgcacctgcttccactcatctagaatggatggatacagcttatttgaaaacagtcttcactctgtatcattactactatttccttcaacatttggtgcatggctccatgtgcttcattcttgtggaatcggaggtgggatcaactttttaattttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC