1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTAAGGTTCTCACACCATACTCTTCAGAAGATGCCCGAGGCTTGCTCAAAGCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagtctgatcttgttaaaccattttgctagctacctatcatttagctgaaatgctctatcataccatttgcag
species | Zea mays |
transcript | GRMZM2G097226_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCTGATCCTGTTATTTTCTTGGAAAATGAATTGCT TTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTGEST: gi|32829636|gb|CD969314.1|CD969314
genomic: CCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagt ... ccatttgcagTTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTG
EST: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCT TTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTGEST: gi|211317947|gb|FL318710.1|FL318710
genomic: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagt ... ccatttgcagTTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTG
EST: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCT TTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTGEST: gi|32940983|gb|CF045802.1|CF045802
genomic: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagt ... ccatttgcagTTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTG
EST: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCT TTATGGAGAATEST: gi|32829111|gb|CD968789.1|CD968789
genomic: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagt ... ccatttgcagTTATGGAGAAT
EST: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCT TTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTGEST: gi|60343110|gb|DN210083.1|DN210083
genomic: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagt ... ccatttgcagTTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTG
EST: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCT TTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTGEST: gi|211088145|gb|FL307530.1|FL307530
genomic: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagt ... ccatttgcagTTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTG
EST: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCT TTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTGEST: gi|91057168|gb|EB167586.1|EB167586
genomic: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagt ... ccatttgcagTTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTG
EST: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCT TTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTG
genomic: GCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagt ... ccatttgcagTTATGGAGAATCTTTCCCAGTTTCTGCTGAAGTGCTTGATTCTAGTTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAAGGTTCTCACACCATACTCTTCAGAAGATGCCCGAGGCTTGCTCAAAGCTGCTATCAGGGACCCTGATCCTGTTATTTTCCTGGAAAATGAATTGCTgtatgtcagtctgatcttgttaaaccattttgctagctacctatcatttagctgaaatgctctatcataccatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT