1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAATATGCATTTGGTTCAACTGAGTCAAAGCAGGATCTTGCTGTTGTTCCACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacatgactgatattcgtgtctgttctaaatcattgacctgtgtgcaactgcacatgactgatattcgtgtctgttctaaatcattgacctgtgtgcaattgcaaaattgatcaatataatcttgtcacacag
species | Zea mays |
transcript | GRMZM2G096585_T05 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|211292816|gb|FL187030.1|FL187030
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|211294948|gb|FL187036.1|FL187036
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|5901160|gb|AW042260.1|AW042260
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|32936507|gb|CF041326.1|CF041326
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CCCCTAACAGCCCAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|33094682|gb|CF054676.1|CF054676
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|71596242|gb|DR906993.1|DR906993
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|211292817|gb|FL187031.1|FL187031
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAATAGAAGATTGAGGCTGCTGGTEST: gi|211294944|gb|FL187032.1|FL187032
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTGATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|33094689|gb|CF054683.1|CF054683
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGGACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|32934317|gb|CF039129.1|CF039129
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|32935304|gb|CF040116.1|CF040116
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|33091320|gb|CF051314.1|CF051314
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|211292815|gb|FL187029.1|FL187029
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|211062769|gb|FL037852.1|FL037852
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGEST: gi|211294946|gb|FL187034.1|FL187034
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATG
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGTEST: gi|211294949|gb|FL187037.1|FL187037
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
EST: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAG GACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
genomic: CACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacat ... tgtcacacagGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATATGCATTTGGTTCAACTGAGTCAAAGCAGGATCTTGCTGTTGTTCCACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCATTTGTGAAGgtgcggacatgactgatattcgtgtctgttctaaatcattgacctgtgtgcaactgcacatgactgatattcgtgtctgttctaaatcattgacctgtgtgcaattgcaaaattgatcaatataatcttgtcacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT