Sequence
atgc intronic sequence ATGC exonic sequenceCAGCAATCATGATGATGAAGAAAATGATGACGGCGACGATGACGACTTCAGTGTTGGACTCAATGCTAGGGATGGAAGTGACAATGGCAGTGGTACTCAAgtatgtgtccatttactgttcctaataccttcttaatctaacataatgtagttggatttgaatgtgtgtgtttctatatatatatataaaataaaggtta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g17570.1 (Oryza sativa), 5'ss of exon 7
CAGCAATCATGATGATGAAGAAAATGATGACGGCGACGATGACGACTTCAGTGTTGGACTCAATGCTAGGGATGGAAGTGACAATGGCAGTGGTACTCAAgtatgtgtccatttactg-ttcctaataccttcttaatctaacataatgtagttggatttgaatgtgtgtgtttctatatatatatataaaataaaggtta
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TAATGACAACGAGGATGATGATGACAATGATGAAGATGATGACGACTTAAGTGTTGGACACAACGCTAGGGATGGCAGTGATAATGGCAGTGGCACTCAAgtaagagaccgtttactacttttcgaaacagtgttactcttatgtgttatgtctatcgctagatatatatgaatatgaacgctagttagaactttttgct-
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv13s0067g03390.t01 (Vitis vinifera), 5'ss of exon 4
CAGCAATCATGATGATGAAGAAAATGATGACGGCGACGATGACGACTTCAGTGTTGGACTCAATGCTAGGGATGGAAGTGACAATGGCAGTGGTACTCAAgtatgtgtccatttactgttcctaatacc-ttcttaatctaacataatgtagttggatttgaatgtgtgtgtttctatatatatatataaaataaaggtta
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TGTTGCTGGGTCAGACAACAACACTGGCAGCAATGATGAGGATAATGGAAGTATTGGTTTGAATGTTAGGGATGGAAGTGACAATGGAAGTGGTACTCAGgtatgagta-attctttgtgtaggatatagtttttactttgttatgctttgctagtgcagtctcctatgtagcattatcattgaactgatgttagaaagaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5268666|gb|AI770630.1|AI770630EST: CAATGCTAGGGATGGAAGTGACAATGGCAGTGGTACTCAA AGCTCATGGACAAAGCGTGCTGTGGAGATTGACAGCCCACAACCTATATCT
genomic: CAATGCTAGGGATGGAAGTGACAATGGCAGTGGTACTCAAgtatgtgtcc ... caaaatgcagAGCTCATGGACAAAGCGTGCTGTGGAGATTGACAGCCCACAACCTATATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCAATCATGATGATGAAGAAAATGATGACGGCGACGATGACGACTTCAGTGTTGGACTCAATGCTAGGGATGGAAGTGACAATGGCAGTGGTACTCAAgtatgtgtccatttactgttcctaataccttcttaatctaacataatgtagttggatttgaatgtgtgtgtttctatatatatatataaaataaaggtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG