Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTAGGGTTGAAAGTCAACTCAAACTTGTCATCAGGCCTATGTATTCAAACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattcttgctattgcaatgccatattcagaggtgggtccaagagttatacaaagtggttacttcctgttgattgattctatttattaacttccag

Basic information

species Zea mays
transcript GRMZM2G094712_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 9
CTGTTAGGGTTGAAAGTCAACTCAAACTTGTCATCAGGCCTATGTATTCAAACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattcttgctattgcaatgcca--tattcagag---gtgggtcc--------aagagttatacaaagtggttacttcctgttgattgattctatttattaacttccag-------------------
|||| ||||||||||||||||| || ||||| || |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| | ||||||||| ||||  ||  ||   ||| | |   |  || ||   ||| |            | ||  || |  || ||    |||  |  || | |   | | |  ||| |||                      
CTGTCAGGGTTGAAAGTCAACTTAAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGgtaacattgatgtcataataattctagtcaaccatagaaagtgagctatatgttgagaaaggcatgcctagaggcagattcagg--gaataaaagtgtgtgctaagttctttttgattatatttttactag

upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g03770.t01 (Vitis vinifera), 5'ss of exon 9
CTGTTAGGGTTGAAAGTCAACTCAAACTTGTCATCAGGCCTATGTATTCAAACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattcttgctattgcaatgccatattcagaggtgggtccaagagttatacaaagtggttacttcctgttgattgattc----tatttattaacttccag-----
|    |||||||| || ||  | |||||||| ||||||||||||| ||||||||| ||  |||||||||| ||||||||||| | ||| || |   |||||||| |     | |||| |||  || | |  ||   | | |     | ||   ||||      ||||  | |||   || ||    | ||| || | || |       
CAAGCAGGGTTGAGAGCCAGGTTAAACTTGTGATCAGGCCTATGTTTTCAAACCCACCCATTCATGGTGCATCTATCGTTGCAATCATCCTGAAAAACAGgtattaa----gttatt-caaaacc-tgtcaaggatttgcttgtgtaatttggcaaaa--accacttgatattggcagaatcctgctcttttttcattttcccttctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67020983|gb|CO449732.1|CO449732
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32927305|gb|CF032117.1|CF032117
EST:     CCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: CCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|149072592|gb|EE286792.2|EE286792
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32927492|gb|CF032304.1|CF032304
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|31356689|gb|CD441046.1|CD441046
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|60341541|gb|DN208514.1|DN208514
EST:     CCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: CCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|7162311|gb|AW519918.1|AW519918
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|78027140|gb|DV495527.1|DV495527
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32867607|gb|CF007289.1|CF007289
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|4775842|gb|AI664847.1|AI664847
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|4874332|gb|AI673852.1|AI673852
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|78080376|gb|DV508788.1|DV508788
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|211187210|gb|FL054032.1|FL054032
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTGGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32934326|gb|CF039138.1|CF039138
EST:     CCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: CCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32835718|gb|CD975396.1|CD975396
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|12970347|gb|BG266938.1|BG266938
EST:     TCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGTCTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: TCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32929180|gb|CF033992.1|CF033992
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32927870|gb|CF032682.1|CF032682
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|38502478|gb|CF972338.1|CF972338
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|24767776|gb|CA402912.1|CA402912
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32837083|gb|CD976761.1|CD976761
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|24764022|gb|CA399191.1|CA399191
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|33095048|gb|CF055042.1|CF055042
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|31362360|gb|CD446717.1|CD446717
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|211132390|gb|FL440019.1|FL440019
EST:     CTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: CTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|211187208|gb|FL054030.1|FL054030
EST:     AACCCTCCTCTTCATGGTGCCTCTATTGTTGCTACCATACTCAGGGACAN                         CGAGATGTWCAACGAATGGACTCTGGAACTGAAGGTCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32929191|gb|CF034003.1|CF034003
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|24764697|gb|CA399860.1|CA399860
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32928849|gb|CF033661.1|CF033661
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|211132391|gb|FL440020.1|FL440020
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|78080377|gb|DV508789.1|DV508789
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|4874452|gb|AI673972.1|AI673972
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32915489|gb|CF020301.1|CF020301
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32927161|gb|CF031973.1|CF031973
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32846059|gb|CD985740.1|CD985740
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|24767122|gb|CA402266.1|CA402266
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|6918687|gb|AW400217.1|AW400217
EST:     AACCCTCCTCTTCATGGTGCCTCTATCG-TGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|24769848|gb|CA404977.1|CA404977
EST:     CATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: CATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|33102270|gb|CF062230.1|CF062230
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|4837574|gb|AI670664.1|AI670664
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAAATGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|24769230|gb|CA404359.1|CA404359
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32835738|gb|CD975416.1|CD975416
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32837197|gb|CD976875.1|CD976875
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|61118378|gb|DN559339.1|DN559339
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|4775838|gb|AI664843.1|AI664843
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32929220|gb|CF034032.1|CF034032
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|6564018|gb|AW231640.1|AW231640
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|20507971|gb|BQ279844.1|BQ279844
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32927179|gb|CF031991.1|CF031991
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|33100553|gb|CF060513.1|CF060513
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32933396|gb|CF038208.1|CF038208
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32927057|gb|CF031869.1|CF031869
EST:     TTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: TTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32930921|gb|CF035733.1|CF035733
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|4874418|gb|AI673938.1|AI673938
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|33100547|gb|CF060507.1|CF060507
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|32867606|gb|CF007288.1|CF007288
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
EST: gi|31360460|gb|CD444817.1|CD444817
EST:     AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAG                         CGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT
genomic: AACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattct ... taacttccagCGAGATGTTCAACGAATGGACTCTGGAACTGAAGGCCATGGCTGATAGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTTAGGGTTGAAAGTCAACTCAAACTTGTCATCAGGCCTATGTATTCAAACCCTCCTCTTCATGGTGCCTCTATCGTTGCTACCATACTCAGGGACAGgtatcattcttgctattgcaatgccatattcagaggtgggtccaagagttatacaaagtggttacttcctgttgattgattctatttattaacttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC