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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttagggttcg...

Basic information

species Zea mays
transcript GRMZM2G094497_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgag-ttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttag-ggttcg
 ||||| || ||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| || |||||||||||  | ||||  | || | | || |  | || ||||  ||  | | ||||||| | ||  |  | | |  ||     |   ||    | ||    || |
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttc--tttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 9
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgta--------ttgagttttggtattgtgtcatatcttgtat------------tttgagtccatcttt--gttttagtgccatt-----gttaatatattttc-cgtcctgag---atctttagggttcg-----------------------------------------------------
 |||||||| || || || ||||||||||| ||||||||||| |||||||| ||||| ||  | ||||||||||| |||||||| ||||| ||||||||||||        |  | | ||  || | ||  | |      |              ||||  || | | |  | |||| ||    |      || | ||  |||   | | |  |   ||  || | ||  |                                                     
TATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttaccttcaactgttattagtttggaagaagcaacaaaaagataggggacttgaaaccttttataggctttaatgatgatttaaaattgacattcttttatgcctttggtttattcttggagtatgagaaataactgaaaatatttctataacaatttgcatgacacttgatcccgtag

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 9
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttagggttcg------
 |||||||| || || || ||||||||||||||||||||||| |||||||| ||||| ||  | ||||||||||| |||||||| ||||| |||||||||||| ||                 |  | || || |  |    ||          |  |  ||   |||| | || |     ||       |||  |||        
TATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcaccaaaa------actaacttttataataaggtggcaaaagaaaagaaaagagatgagtaatcttttatagcctctattgggattatagtttccttgtt

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 9
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatatttt-ccgtcctgagatctttagggttcg
 |||||||| || || || ||||||||||||||||||||||| |||||||| ||||| ||  | || |||||||| |||||||| ||||| |||||||||||| ||    |     |  | | |||   ||      ||    |     | |       | ||  || | | | |    | | || |||| | ||  | | 
TATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgtacctaaaactattataataaggtggcaaaagaaaagaaaagagatgggaaatcttttatagtctctatcattgccatgggatcat-agtttcct

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 10
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgta--ttgagttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttagggttcg-----
 |||||||| || || || ||||||||||| ||||||||||| ||||| || ||||| ||  | ||||| ||||| |||||||| ||||| ||||||||||||  ||   |||   ||||||    ||  ||| |     ||  || |       ||| |  | |   || || || |   |     |||  ||||   | |     
TATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacctttaactattgt----tagtttggaaaagaag--caacaaaaagatag-gagacttgaaacattttatggatttaatgataattagaaattgacttt

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 10
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggtattgtgtcatatcttgtatt-ttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttagggttcg
 || || || ||||| || || || ||||||||||||||||| |||||||| ||||| ||  | ||||| ||||| || || || ||||| |||||||||||  | |    |  |    ||   | |     ||| ||||         || |     |||     || | | |        || | | | ||||      
TATCGCACTTACAACTGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCATTCTCACAGACATGAGTTCCTACGCCGATGCTCTTCGTGAGgtgataaccgatatttgcatgctctgttcacaattcttgaactttgagatgataggaagcctgaaatagtgtttaacgttgactaatacccttag------

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 9
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtat--tgagt-tttggtattgtgtcatatcttgtattttgagtc-catctttgttttagtgccattgttaatatattttccgtcctgagatctttagggttcg
 ||||| || |||||||| |||||| |||| |||||||||||||| || || |||||||| ||||| |||||||| |||||||| ||||| ||||||||||||   ||| | |||| ||  |    |  || | |||||     |   | |||   |        ||| |||||   ||      |||                
AATTGCCCTCACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaaaatgaatatttgataccggagtagttcctttatttcataccatgttttttcctcttcatgtttgataataagattgagaaactgtag-------------

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 9
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttagggttcg
 ||||| |||||||| || ||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||| |||||||||||| |||||||   | |  | |  | | | ||    ||| || |  |||| ||||       | | |||| | ||  |   | | || || |||      
AATTGCCCTAACAACCGCTGAATATTTGGCTTATGAATGTGGAAAGCATGTGCTTGTTATATTGACAGACATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaatgagtttcactgtcct-ttgtgtat-gtcccatgattcaaaatttgatttaa----gctttgaataaaattaacaaac-gtgaactctag------

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 9
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttagggttcg--
 |||||||| ||||| || ||||||||||| ||||| |||||||||||||| || ||||| || ||||||||||| |||||||||||||| |||||||||||| | | || |  |  | |   || |   |  | |  ||   |  | | | ||| | || |  || |   || |  |   | || |    |  | ||    
AATTGCTCTCACAACTGCAGAATATTTGGCTTATGAGTGTGGGAAGCATGTTCTAGTTATATTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaataaattctc-tgctattgaattttcagggtctatagcatagttct-tattattaccgtactttactaatataacaaacagatagtcgttagtttgata

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 9
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggta-ttgtgtcatatcttgtattttgagtccatctttgttttagtgcca---ttgttaatatattttccgtcctgagatctttagggttcg
 |||||||| || || || |||||||| |||||||||||||| || ||||| ||||| ||  | ||||||||||| |||||||||||||| ||||||||||||  || ||||  |  || |||||     ||  || ||| |   | |   | | |   |||   |   | | | | |    | | |   |   |||       
AATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattttttctgcttttgtcaatgaatggtttgtgattgtctttccttataaaaaccaagataacttaaagactaattgcctttcaaaaattacac----

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 8
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggtattgtgtcatatcttgtattttgagtccatctttgtt--ttagtgccattgttaatatattttccgtcctgagatcttta---gggttcg-------------------------------------------------------------------------------------------
 || || || || || || ||||| |  || |||||||||||||||||||| || || ||| |||| |||||||| || ||||||||||| || |||||||||   ||| ||  | ||     | |  ||    || || ||| | ||      ||||  ||  ||  | | ||  | |    | |   |   ||   |   | |                                                                                           
AATCGCCCTTACTACTGCTGAATACTACGCTTATGAATGTGGGAAGCATGTCCTGGTCATCCTGACGGATATGAGTTCATATGCAGATGCGCTGCGTGAGgtac-aagtgtttctcttaa---agacttttcgcttggactcctttttcagaagttagctcctgtgaaattctacatgctactccgcagttggtatctgaaatagtttttaagcaaatttgtaatctattcagttggtttttaattaagaccttcagtgtgctacaaattttttccactctcaattcttcaaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929245|gb|CF034057.1|CF034057
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|5915388|gb|AW053029.1|AW053029
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|6445489|gb|AW179407.1|AW179407
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32928465|gb|CF033277.1|CF033277
EST:     ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|4681248|gb|AI629918.1|AI629918
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|211474169|gb|FL062077.1|FL062077
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|67040204|gb|CO466459.1|CO466459
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32929097|gb|CF033909.1|CF033909
EST:     ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32944174|gb|CF048993.1|CF048993
EST:     ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGGG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|13125954|gb|BG316629.1|BG316629
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32838699|gb|CD978380.1|CD978380
EST:     ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|6056572|gb|AW090977.1|AW090977
EST:     AGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: AGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|33092363|gb|CF052357.1|CF052357
EST:     ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32928990|gb|CF033802.1|CF033802
EST:     ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32944913|gb|CF049732.1|CF049732
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGGG                         GTTTCTGCAGCCCGAGAAGAGGTACCAGGTAGGCGTGGTTATCCTGCATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|31351441|gb|CD435798.1|CD435798
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32928322|gb|CF033134.1|CF033134
EST:     ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|67020067|gb|CO448816.1|CO448816
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|24934300|gb|CA452518.1|CA452518
EST:     ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|33101328|gb|CF061288.1|CF061288
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|6021392|gb|AW066320.1|AW066320
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|13125942|gb|BG316617.1|BG316617
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|13125963|gb|BG316638.1|BG316638
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|60343460|gb|DN210433.1|DN210433
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|13125933|gb|BG316608.1|BG316608
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|31351755|gb|CD436112.1|CD436112
EST:     TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagtt ... ttttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgagttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttagggttcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG