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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaacattcatttatcattttatttcttctaagggcgccataatcaattctgcaatgttttacatgcatctt...

Basic information

species Zea mays
transcript GRMZM2G094497_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 8
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa-ggacttgtgaatttgtaaccaacattcatttatcattt--------tatttcttctaagggcgccataatcaatt-ctgcaatgttttacatgcatctt----------------------------------------------------------------------
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| || |   ||||| |||| || | |   | |   |||| | ||          || |||| |||  |      |  | | || ||| |  ||| || ||||||| |                                                                      
GTTTGCTGCTATGGGAGTGAATATGGAAACAGCCCAATTCTTCAAACGTGATTTTGAAGAGAACGGGTCAATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacatatagcagacttttgaagttctgattcataccaatttgttatgcatggaaactaattctgctagtgtatatgtgcttattttctgtatggttatatatgcatcatttttaacagaagttgacctgattgttaaaggtagaacatattttctaacaccaggctactctgtttacag

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G42940.1 (Glycine max), 5'ss of exon 8
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgta-cctacaaggacttgtgaatttgtaac--caacattcatttatcattttatttc-ttctaagggcgccataatcaattctgcaatgttttacatgcatctt
 ||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| |||||||| || |||||| | || || ||||| || ||| ||||| ||    |  | ||   |  |   |||  ||  |||   | |||| || | ||  || |  |   ||    |  ||    |   ||    | |        
ATTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaaccctttaacaattaaaatctgccaacgtcactattacatcatcaattaactttgttatttgaatgcagggactaaa--agtggtgaccaagaaaaggt--

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 8
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaac-attcatttatcattttatttcttctaagggcgccataatcaattctgcaatgttttacatgcatctt
|||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| |||||||| || |||||| | || |||||||| || |||||||||      || ||  ||       |   |    ||||   | || || |  ||    |     |   ||   |   | || ||| || |  ||| |  | 
GTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGgtagtctttagaaccagtatgcaaatgttcttttattcccatttctttgttgtttacttgccttcctgatttccttctttgtaattttatctatgtagtt-

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 9
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaacattcat---ttatcattttatttcttctaagggcgccataatcaattctgcaatgttttacatgcatctt
|||||| ||||||||||| |||||||| || || || || ||||| ||||| ||||| |||||||| || |||||| | || || ||||| || ||| |||||  |      |  |   ||| ||| | |  | |   |   | |||| || || |  | | |  ||   | | | ||  | |  | |    | |||  |   
GTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaattctttaaaaattaaaatctgttaacgtcgtcgttacgtcatcaattaatgttatttgaatgcag-agactaaaagcggtgacgaagaaaatgttta--

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 8
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaacattcatttatcattttatttcttctaag--ggcgccataatcaattctgcaatgttttacatgcatctt---
 ||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| || ||||| || |||||| | || |||||||| || |||||||||      || ||  ||     || ||      ||   ||   ||||  ||  |  | |   | |  |||   |   | || ||| || |  ||| || |    
-TTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGtagtctttagaaccagta----tgcaaatgctcttttattcctatttctttgttgtttacttgccttcatttccttctttgtaattttgtctatgtatttgaga

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 9
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaacattcatttatcattttatttcttctaagggcgccataatcaattct-gcaatgttttacatgcatctt
||| || || ||||| ||||||||||| || || ||||| || ||||||||||| || |||||||| || |||||| | || || ||||| || ||  ||| |        | || |  |       ||  ||||   |  | ||  || ||  ||| || |      | |    ||||     |||||| |   ||    
GTTCGCAGCAATGGGTGTGAACATGGAGACTGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTGgca-------agtctcgcaatcacactacagacatct-tgaagcaaatt-ttagttccaatgtttttctgaaggtttctcattctgttttccgcacag---

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtac------ctacaaggacttgtgaatttgtaaccaacattcatttatcattttatttcttctaagggc--gccataatcaattctgcaatgttttacatgcatctt
|||||| |||||||| ||||||||||| |||||||| |||||||| || ||||||||||| ||||| || |||||| | || || ||||| ||||| ||||||       || | |   ||  |     | | |   |  ||  |  |  ||||   |  |||| ||       || | | ||   | |  | ||  |   |      
GTTTGCAGCTATGGGTGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAATGGATCAATGGAGAGAGTTACTCTTTTCCTGAACCTGgtaaatttgacttctatagctgattgccatatcatggagttttttcaagtatttagatgtttcttagctttaaacagatttaaccttcctttattccaacag------

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgta-cctacaagg-acttgtga-atttgtaaccaacattcatttatcattttatttcttctaagggcgccata----atcaattctgcaatg--ttttacatgcatctt----------
 ||||| |||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| || |||||  |||| |||||||| |||||  |||||   ||| ||  ||| ||   | | ||||     || | |  |  || ||| ||||| ||       ||||    |||| |   | | ||   ||   ||||||             
TTTTGCAGCTATGGGTGTAAACATGGAGACAGCTCAGTTTTTCAAGCGTGATTTTGAAGAAAATGGATCGATGGAAAGGGTTACCCTTTTCCTGAACTTGgtaatttactagttactagtactactagtaatttctatgcttcca--atcttacttcttgtagtactatcatattatatcagtgaggaattgaccttattatgcattccactcgaacag

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 8
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctac-aaggacttgtgaatttgtaaccaacat-tcatttatcat-------tttatttcttctaagggc---gccataatcaattctgcaatgtttt-----acatgcatctt--------
 ||||||||||||||||| |||||||||||||| ||||| || || ||||||||||| || ||||| ||||||||| | || |||||||| || ||  ||||| | |  ||  | ||      || |    |  || |  ||||  ||        | ||||| | || | |    |   |  |   |  |  ||| |||      |  ||  ||||        
CTTTGCTGCTATGGGAGTAAACATGGAAACAGCACAATTTTTTAAGCGTGATTTTGAGGAAAATGGATCCATGGAGAGAGTGACCCTTTTCCTAAACTTGgtatcaattaataatttaatctcttatcctaattatgttgtttaggatgatctctctcatttcatttaggtggaagggtgttttttttcttttaatatttgtaatgatgtggctcttttgcacag

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacct-acaaggacttgtgaatttgtaaccaacattcatttatcattttatttcttctaagggcgccataatcaattctgcaatgttttacatgcatctt-----
 ||||| ||||||||||| |||||||| ||||||   ||||||||||||||||| || || || || ||||||||| | || || |||||||| ||| ||||| || ||    | |  | |  || |    ||||          |   ||| |   |   ||  |   |    | ||| | | |   |   || | | ||     
TTTTGCAGCTATGGGAGTTAACATGGAGACAGCTACCTTCTTCAAACGTGATTTCGAGGAAAACGGGTCCATGGAGAGAGTGACACTTTTTCTCAATTTGgtatctcacttttaatcttcatcttctgtttaacacg-----gcaaagatatcttcaccgtggttgt-gttcctagttcagaactagctcttattccttttccctg

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 7
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaacattcatt-tatcattttatttcttctaagggcgccataatca-attctgcaatgttttacatgcatctt
                 | |||||||| ||||||   ||||||||||||||||| ||||| ||||| || |||||| | || || |||||||| ||  |||||  |   |    |  |     |||| ||  |   ||    ||     ||  |  || ||   || | |  |   | |||| |  |        |  | ||
-----------------TTAACATGGAGACAGCTACTTTCTTCAAACGTGATTTCGAAGAAAATGGATCTATGGAGAGAGTGACACTTTTTCTCAACTTGgtatgtttcaatcttaatattcctgtatccctctaccacagcattggagtacatactc-aacttcgtcctggttgtactctggatggaagcgtg-gagtgtt

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 5'ss of exon 7
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggact-tgtgaatttgtaaccaacattcatttatcattttatttcttctaagggcgccataatcaattctgcaatgttttacatgcatctt----------------------------------------------------------------------------------------------------
 || || ||||||||||||||||||||||| ||    ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||| ||| |||||  ||||    |  | |   ||| |   | |  ||||   |   ||||   |  | || ||   |   |  || ||       ||  |  | |  || |                                                                                                    
TTTCGCCGCTATGGGAGTGAACATGGAAACTGCCACTTTCTTCAAACGCGATTTTGAAGAAAATGGATCCATGGAGAGAGTGACACTTTTTCTCAATTTGgtatgtacatcttcagttttcttttatcgtcgattttcacc-acatttttggattatatatgga-acttcatccagtttcttttcgtaatggaagagtcgtctgttttgagacttcacaaagtcaattttcctccagtccttgcgtttttttcctggattaagttctggaattttattttaggatcgtcttgggctttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|194716810|gb|FK933969.1|FK933969
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|6445489|gb|AW179407.1|AW179407
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|4681248|gb|AI629918.1|AI629918
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|67040204|gb|CO466459.1|CO466459
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|32838409|gb|CD978087.1|CD978087
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|32831681|gb|CD971359.1|CD971359
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|32910787|gb|CF015599.1|CF015599
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|13125954|gb|BG316629.1|BG316629
EST:     TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCC-TTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|32929168|gb|CF033980.1|CF033980
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|33101985|gb|CF061945.1|CF061945
EST:     ATTTTGAAGAGAACGGTTCCATGGAACGGGTCACCCTTTTTCTGAATCTG                         GCTAATGATCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|32928560|gb|CF033372.1|CF033372
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|31351441|gb|CD435798.1|CD435798
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|211042631|gb|FL062113.1|FL062113
EST:     TTTTGAAAGAGA-TGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGGACGTATTATCACC
genomic: TTTTGAA-GAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACC
EST: gi|31351754|gb|CD436111.1|CD436111
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATTC-CCCCTCGGATTGCTCTAAC
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTAT-CACCCCTCGGATTGCTCTAAC
EST: gi|33094782|gb|CF054776.1|CF054776
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|33102163|gb|CF062123.1|CF062123
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|67020067|gb|CO448816.1|CO448816
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|32850751|gb|CD990432.1|CD990432
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGGACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|32850726|gb|CD990407.1|CD990407
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGGACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|6021392|gb|AW066320.1|AW066320
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|33101471|gb|CF061431.1|CF061431
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|33102084|gb|CF062044.1|CF062044
EST:     ATTTTGAAGAGAACGGTTCCATGGAACGGGTCACCCTTTTTCTGAATCTG                         GCTAATGATCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|13125942|gb|BG316617.1|BG316617
EST:     TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCC-TTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|211474175|gb|FL062083.1|FL062083
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|32831612|gb|CD971290.1|CD971290
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|33102277|gb|CF062237.1|CF062237
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|13125963|gb|BG316638.1|BG316638
EST:     TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCC-TTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|13125933|gb|BG316608.1|BG316608
EST:     TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCC-TTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: gi|31351755|gb|CD436112.1|CD436112
EST:     ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG                         GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 611

GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 864

GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 596

GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1032

GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaacattcatttatcattttatttcttctaagggcgccataatcaattctgcaatgttttacatgcatctt

- - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA