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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTAGTGCATACTTGACAACCCCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtcaaatctggttctgtgctctctctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgatt...

Basic information

species Zea mays
transcript GRMZM2G094444_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094444_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g11510.1 (Oryza sativa), 5'ss of exon 8
GCTGTAGTGCATACTTGACAACCCCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtcaaatctggttctgtgctctctctct-ctctctctctctctctctctctctctct-ctctctctctctctgtgtgtgtgtgtgtgtgtgtgatt-----------------------------------------------------------------
| | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||  |||||||   |  ||||||         |||  | ||| ||    |  | |  |  ||      |   || |     |  ||| |        | | |                                                                         
GTTTTAGTGCATACTTGACAACCCCCTTGGATGTGATCAAGACAAGGCTGCAAGTACAGGGATCAACAACTAGgtaactggaaaatctcacctatctctccttttctgctaggccaatatgacagtcatgaaatgaacttttatgataactgcgatatccaatttatactctcccaaatcgtcacacgcgtcattttgctgtttgacaaggtactgattattcttttgtttgttaatcag

upper sequence: GRMZM2G094444_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv17s0000g07290.t01 (Vitis vinifera), 5'ss of exon 7
GCTGTAGTGCATACTTGACAACCCCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtcaaatctggttctgt-gctctctctctctctctctctctctctctctctctctctctctctctctctctgtg-tgtgtgtgtgtgtgtgtgatt
| | |||||||||  | || || ||||||||||| |||||||||||| ||||||| || ||||| |  || |||||    ||   | |  |   || |   | |||           | ||| ||| | ||| ||| | ||||||| ||   |           |   |   |  
GTTTTAGTGCATATCTAACCACTCCTTTGGATGTCATCAAGACAAGATTGCAAGTGCAGGGATCGAATTCAAGgtattgttctttttttatgaggtagaaatatcttgtgtgggacttgtctgtctttgtctgtctttgtctctctttcctcgacacacacaccttcattcaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24961534|gb|CA483545.1|CA483545
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTAT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTAT
EST: gi|76293128|gb|DV032696.1|DV032696
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|71328897|gb|DR801131.1|DR801131
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|76288142|gb|DV027710.1|DV027710
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|24773109|gb|CA408363.1|CA408363
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|94472734|gb|EB701692.1|EB701692
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|60356268|gb|DN223241.1|DN223241
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|60394099|gb|DN226969.1|DN226969
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|58029384|gb|CX724811.1|CX724811
EST:     GGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: GGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|24774093|gb|CA409347.1|CA409347
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATG
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATG
EST: gi|211359788|gb|FL457495.1|FL457495
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
EST: gi|78117345|gb|DV535732.1|DV535732
EST:     CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAG                         GTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT
genomic: CCTTTGGATGTGATCAAGACAAGACTGCAAGTACAAGGATCAACGTCTAGgtacgcgtca ... taattatcagGTACAATGGATGGCTGGATGCTATAACAAAGACGTGGACTTCCGAGGGGGT