Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAGgtattaccccaaatcttgcattgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcag

Basic information

species Zea mays
transcript GRMZM2G093316_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 5'ss of exon 8
ATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAGgtattaccccaaatcttgcattgttctgc--tactttagttattttggccagatttatatat-cctgacctttgcttatgttgtga-caaatatgcag--------------------------
|||||||||||||||||  | || ||||||||||||||||| ||||||||||||||||||||| |     ||||| | |||| |||| |  | || |||||||||  |    ||||||   |  ||   ||  |||  | |    | |||   |||                            
ATCAATGGGCAGCAGTGTGCCTTTTCATTTAAGGGTAGCCCGTACTGGATGGCTCCTGAGgtaatga---aaatcctacattcttctacacttctctagttattt--gatgaatttatgcctatcttctctccgctgttataaaaatcaaccttgcttctctcacacatgtaataactatgcag

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
ATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAGgt-attaccccaaatcttgc-attgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcag
|||| |||||||   || ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |       |||||| ||     |    ||| | ||||   | | || |||  |||   |  | |     | ||||  |         |||
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttcttgccataaccttatctcttcatttat---gacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S8_299V6.1 (Physcomitrella patens), 5'ss of exon 9
ATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAGgtatt-----accccaaatcttgca-ttgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtg-acaaatatgcag-------------------------------------------------
||   ||  ||    |  |     || |||||||| ||||| || |||||||||||||||||||      |   |||  || | |  | || ||||   ||||    | |    || |||| |     |    || |||||| ||    |||| || | ||                                                 
ATTTCTGCTCAATCTTTTCTCAAGTCCTTTAAGGGAAGCCCGTATTGGATGGCTCCTGAGgtatgtgtaaaatgcaatcctagtagctcttttgctcaattagcatctata--tagttttaaagtggttatatttggcttatatttaatacaagta-gtaggacctatctctctaaatatgagcctttgtgcatggtttccttctgatag

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 5'ss of exon 9
ATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAGgtattaccccaaatcttgcattg-ttctgctactttagttattttggccagatttatatatcctgacc-tttgcttat----gttgtgacaaatatgcag-------------------------------------------------------------
||   ||  ||    |  |     || || ||||| ||||| ||||||||||||||||||||||     ||||  |   |||| || ||||   |   |||  |    || |  ||   ||||  | | | ||| | |    | | | ||  | ||||||                                                             
ATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAGgtat-gtgtcaaacgtataattgattatgctgact-gtttacatcttacaaacatactcatccaaatcgtctgcatttagccggtattacttaaatgcagtgatggagctgttagagattcccctcctcaattacgatttaacatgattcttaattggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78116720|gb|DV535107.1|DV535107
EST:     AGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAG                         GTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTA
genomic: AGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAGgtattacccc ... aaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTA