1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATCTCCTATTACAACCATCCAGTATCGGACCTTCTCTCTGATGGCACGCTGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttaccttcatgatagcctattatatggtagacttcacataacaatttatattttttgacatttcag
species | Zea mays |
transcript | GRMZM2G093239_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAG CATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATTEST: gi|78108751|gb|DV527168.1|DV527168
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
EST: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAG CATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATTEST: gi|71431087|gb|DR812137.1|DR812137
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
EST: TGTCCAGTATTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAG CATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATTEST: gi|32870682|gb|CF010364.1|CF010364
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
EST: TGTCCAGTACTTCTTTCTTGTGCTCAGGATGGAAACCTTTCTTTTTTCAG CATCACGACAGATGCTAAGGGATACCTTGACTCTTATATGCTCCCTAAAATEST: gi|76908768|gb|DV163090.1|DV163090
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATA-CTTGACTCTTATATGCTCCCTAAAAT
EST: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAG CATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCTCCTATTACAACCATCCAGTATCGGACCTTCTCTCTGATGGCACGCTGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttaccttcatgatagcctattatatggtagacttcacataacaatttatattttttgacatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA