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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGAGAGTGAGACCACTGAAAGGTTGTCTAGCCGACCACATGGTATACGAACCAACGATTTTGTTCCCCATGATGATGATATACTGGCATCTATTTTAGgtatgtatgacatacaatgcatttctgtcgcctggatttattgtgtttacctaatcacttgacttgaccttgcattag

Basic information

species Zea mays
transcript GRMZM2G093119_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093119_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g67250.2 (Oryza sativa), 5'ss of exon 7
TTAGAGAGTGAGACCACTGAAAGGTTGTCTAGCCGACCACATGGTATACGAACCAACGATTTTGTTCCCCATGATGATGATATACTGGCATCTATTTTAGgtatgtatga-catacaatgcatttctgtcgcctggattt-attgtgtttaccta-atcacttgacttgaccttgcattag
 | || ||||  || |||||||  ||||||||| |||||| ||||| | ||||||  |||  | ||||  ||||||||||| ||||||| ||||| ||||||||| |||| | | |    || |  |   |||||| |||   ||  ||  |  | |  |  ||  | ||| |    ||||
CTCGAAAGTGCAACTACTGAAAAATTGTCTAGCAGACCACGTGGTAAAAGAACCATTGATGGTATTCCTGATGATGATGATTTACTGGCGTCTATATTAGgtatggatgaacctcctcaacaataattgtgcctggcttttgctgcattgtctaacactaactgtgtggacttgtatttag

upper sequence: GRMZM2G093119_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA18G48020.1 (Glycine max), 5'ss of exon 13
--TTAGAGAGTGAGACCACTGAAAGGTTGTCTAGCCGACCACATGGTATACGAACCAACGATTTTGTTCCCCATGATGATGATATACTGGCATCTATTTTAGgtatgtatg---acatacaatgcattt--ctgt-cgcctggatttattgtgt--ttacctaatcacttgacttgaccttgcattag--------------------
    ||||  ||       |  ||  ||     |  || | ||    |   ||||    || | ||||||| ||||||||||| ||||| ||||||| ||||||||    |   || |  ||||| |||  || |     ||| |  | |||||  || |||    | ||   ||||   || || |                     
GTGCAGAGTATGGATTTGATTGAATCTTACACGG--GAGCTCAATCCAAGAGAACTGCTGAGTCTGTTCCCGATGATGATGATCTACTGTCATCTATATTAGgtataacagtggacttttaatgctttttgctatatatttggttacagtgtgtattttccttgagaattaggttgaggctgaatgaaagaatttgttgttggttcag