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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGAGGAAAGAAAGCGTCACATATGACTTATCTGTTAGCGTTCTTGAGGTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCATCTAAAAAgtacaaaaaattatcttcaggtcctgattttttgtttgtagtagtaggagctcgtgttaactcaacattcacgttttgcatttag

Basic information

species Zea mays
transcript GRMZM2G092232_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g02290.2 (Oryza sativa), 5'ss of exon 2
AGGAGAGGAAAGAAAGCGTCACATATGACTTATCTGTTAGCGTTCTTGAGGTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTC---CATCTAAAAAgtacaaaaaattatcttcaggtcctgattttttgtttgtagtagtaggagctcgtgttaactcaacattcacgttttgcatttag
   |||| ||||| |  ||||||||   | | ||||| ||||| |||||||| |||||||| |||||||||||||| |||||  | || |   | ||||| |||||  |    || | || |||  |||   |    |   || || |   | |  ||| |||||    ||    || ||  |     
---AGAGAAAAGAGACTGTCACATACAGCATTTCTGTCAGCGTGCTTGAGGTCTACAATGAGCAAATCAGAGACCTGCTTGCATCATCCCCTTCGTCTAAGAAgtatgaccgtttctttt-aggatctgtgctgggttccataatattgccatcctgtgataacttgtaatcttggtattttag----

upper sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G33340.1 (Glycine max), 5'ss of exon 8
AGGAGAGGAAAGAAAGCGTCACATATGACTTATCTGTTAGCGTTCTTGAGGTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCATC-TAAAAAgtacaaaaaattatcttcaggtcctgattttttgtttgtagtagtaggagctcgtgttaactcaacattcacgttttg-catttag--------------------------------------------------------------
   | ||||  ||||   |  |||||||| |||||||||| ||  | ||||||||||||||||||||||||||  |  | || ||    | | | | |||     ||    |||| || |    ||| ||   | | |    ||||  ||  | ||  |       ||  || | |     ||  |                                                               
---AAAGGAGTGAAACATTTTCATATGACATATCTGTTAGTGTGATAGAGGTTTACAATGAACAAATCAGAGATTTATTGGCTACAGGACAAACATCAAAGAGgtaatttgttatgtttat-cactggttccatttgtaagatagtctgatatagtaatgtggtttcaagcatgctagaatatgcaatatcactagtctgagcaggaaactaaagtagctagaatgatttatcttgaaatgattatcag

upper sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA01G02620.1 (Glycine max), 5'ss of exon 11
AGGAGAGGAAAGAAAGCGTCACATATGACTTATCTGTTAGCGTTCTTGAGGTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCATCTAAAAAgta-caaaaaattatcttcaggtcctgattttttgtttgtagtagtaggagctcgtgttaactcaacattcacgttttgcatttag----------------------------------------------------------------
   | ||||  ||||   |  |||||||| |||||||||| ||  | ||||||||||||||||||||||||||| |  | || ||    | | |   ||||    ||    |||| || |    ||| ||     | |    ||||  ||  | ||  |       ||  || | |  | || |                                                                  
---AAAGGAGTGAAACATTTTCATATGACATATCTGTTAGTGTGATAGAGGTTTACAATGAACAAATCAGAGACTTATTGGCTACAGGACAAACATCAAAGCGgtaatttgttatgtttat-cactgcttccacttgtaagatagtctgatatagtaatgtggtttcaagcatgcta-gaatgtgcaatatcactagtctgagcaggaaactgaagtagctagaatgatttatcttgaaatgattatcag

upper sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT2G22610.2 (Arabidopsis thaliana), 5'ss of exon 10
AGGAGAGGAAAGAAAGCGTCACATATGACTTATCTGTTAGCGTTCTTGAGGTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCATCTAAAAAgtacaaaaaattatct------tcaggtcctgattttttgtttgtagtagtaggagctcgtgttaactcaacattcacgttttgcatttag
   | |||| ||| | | |  ||||| || |||| ||||| || |||||||| |||||||||||||| |||||| |  | || || || |||     |||| |  || |||| |||      | |  || | |     |     | | |  || || |  | |||| |    |||    |||   |   ||
---AAAGGAGAGAGACCATTTCATATAACATATCGGTTAGTGTCCTTGAGGTCTACAATGAACAAATAAGAGACTTGTTGGCAACATCACCAGGGTCAAAGAAgtaagaattctctacctaattacatcataaacagatagggattgaaacagaagttgatcttaatt--gtatttgattttgctaccaag

upper sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv18s0001g07800.t01 (Vitis vinifera), 5'ss of exon 8
AGGAGAGGAAAGAAAGCGTCACATATGACTTATCTGTTAGCGTTCTTGAGGTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCA---TCTAAAAAgtacaaaaaattatct--tcaggtcctgattttttgtttgtagtagtaggagctcgtgttaactcaacattcacg----ttttgcatttag------------------------------------------------------------------------------------------------------------
   | ||||||||||   | | ||||    ||||||||||||| ||||| || |||||||| |||||||| ||||| |||||||| || |||   || || ||||| |||  ||||| |  |||  | || |   ||  |||| |  |  | | |    | ||   |||||    ||     |||||   ||||                                                                                                            
---AAAGGAAAGAAATTTTTAAATATACAATATCTGTTAGCGTGCTTGAAGTCTACAATGAGCAAATCAGGGACCTGCTTGCCACTTCGCCAACATCAAAGAAgta-aaattattatttactcatattctcagcattcttttgaaaaacaaaggggaaattttttttcaactgagacactatttttgttcttagccaatgaatttgacttggttaaataatcataaaaatgccttcatgttattggctcattttgactagccaacaaactgtcaattgaatttgaatttctttcaatgttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021156|gb|AW066084.1|AW066084
EST:     GTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCATCTAAAAA                         GCTGGAGATCAAGCCAAACAGTGAAGGACAAAATCATGTCCCTGGGTTAGT
genomic: GTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCATCTAAAAAgtacaaaaaa ... ttgcatttagGCTGGAGATCAAGCCAAACAGTGAAGGACAAAATCATGTCCCTGGGTTAGT
EST: gi|78078507|gb|DV506920.1|DV506920
EST:     GTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCATCTAAAAA                         GCTGGAGATCAAGCCAAACAGTGAAGGACAAAATCATGTCCCTGGGTTAGT
genomic: GTTTACAATGAACAAATCAGAGACCTTCTTGCCACGTCTCCATCTAAAAAgtacaaaaaa ... ttgcatttagGCTGGAGATCAAGCCAAACAGTGAAGGACAAAATCATGTCCCTGGGTTAGT