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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACAATGCTATCATTGTGCTGGCTATCATCTGTCTTCAGTTGCCATTTGAGTTGGCCTATGCTCATCTATATGAGATTACAGAAACTGAGGCTATGAAgtgagtatttcatatttttcaaatttgatatggtcaccttaaagctgtgcaactgaccttgctagccagcttttctaccctagtacttaataccagtttcccttgttttccatttctggtcatcattaaaatctgcactctattattctgatcaattttatatcatacag

Basic information

species Zea mays
transcript GRMZM2G091494_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091494_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g51040.1 (Oryza sativa), 5'ss of exon 8
GGAACAATGCTATCATTGTGCTGGCTATCATCTGTCTTCAGTTGCCATTTGAGTTGGCCTATGCTCATCTATATGAGATTACAGAAACTGAGGCTATGAAgtgagtattt---catatttttcaaatttgat-atggtcacc------ttaaagctgtgcaactgaccttgctagccagcttttctaccctagtacttaataccagtttcccttgtttt------ccatttctggtcatcattaaaatctgcactctattattctgatcaattttatatcatacag
|||| ||||||||||||||  |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||  | | || ||  | |    ||||   |   || |  | ||| |          | || | ||||||| ||||||    |||    |||    ||  | |  || ||| |  || |   ||||||         ||| |||| | || |||||| || |   |    |||| ||   |  | | | || |||
GGAATAATGCTATCATTGTTTTGGCTATCATTTGTCTTCAGCTGCCATTTGAGTTGGCCTATGCTCATCTATATGCGATTACAAAAACTGAGGCGCTAAGgtaagattgtaggaatatcactatgatctattcatgattcttgagttatcaacgatgtgcaattgacctga--agcttattttct--cctaattgttttatatctattccttatgttttattttgttgtttatggttaccactaaaatatgaagcat-cagttcttattgctgatgt-ttatgcag

upper sequence: GRMZM2G091494_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G01550.1 (Glycine max), 5'ss of exon 8
GGAACAATGCTATCATTGTGCTGGCTATCATCTGTCTTCAGTTGCCATTTGAGTTGGCCTATGCTCATCTATATGAGATTACAGAAACTGAGGCTATGAAgtgagtatttcatatttttcaaatttgatatggtcaccttaaagctgtgc-aactgaccttgctagccagcttttctaccctagtacttaataccagtttcccttgttttccatttctggtcatcattaaaatctgcactctattattctgatcaattttatatcatacag
| ||  ||||||||||| |  |    ||||| || || ||||| |||||||||||||| ||||||||||| |||||  ||   ||  ||||    || |||| || ||  ||||   ||    ||   ||     || |      ||||  || |||   | || |  |   ||| ||   | | | ||  |  |  | |   ||||| |                                                             
GAAATGATGCTATCATTATCTTCAGCATCATATGCCTCCAGTTACCATTTGAGTTGGCATATGCTCATCTTTATGAAGTTCTTGATTCTGATATAATTAAgtaagaatg-cataccattttttttctttacttctactt---gtttgtgttaattgaatattct-gtta---tttttatttttggaatttctttc--tctgtgttgttct-------------------------------------------------------------

upper sequence: GRMZM2G091494_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G20980.1 (Glycine max), 5'ss of exon 8
GGAACAATGCTATCATTGTGCTGGCTATCATCTGTCTTCAGTTGCCATTTGAGTTGGCCTATGCTCATCTATATGAGATTACAGAAACTGAGGCTATGAAgtgagtatttcatatttttcaaatttgatatggtcaccttaaagctgtgcaactgaccttgctagccagcttttctaccctagtacttaataccagtttcccttgttttccatttctggtcatcattaaaatctgcactctattattctgatcaattttatatcatacag
| ||  ||||||||||| |  |    || || || || ||||| |||||||||||||| ||||||||||| |||||  ||   ||  ||||    || |||| || | | | |||  ||    |||  | ||     |||  |  |||     |    ||  | |     | |  ||   |  |  ||   |    |||| || | ||    |                                                         
GAAATGATGCTATCATTATCTTCAGCATTATATGCCTCCAGTTACCATTTGAGTTGGCATATGCTCATCTTTATGAAGTTCTTGATTCTGATATAATTAAgtaag-actacgtatcattt---ttttctgtg-----cttctacttgt-----tagtgttaattgaatattctgttatttttatttttggaatttctttctctggattattctc--------------------------------------------------------