1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTTCCCCTGTAGCAATTGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttatatacaaattaatacctaatacttatgcagtgtctgtgacaattatattgttgagtcaaatgaatatgatgattcatcctggtaccagtat...
species | Zea mays |
transcript | GRMZM2G089676_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAG GCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAAEST: gi|60343126|gb|DN210099.1|DN210099
genomic: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttat ... tttcttgtagGCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
EST: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAG GCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAAEST: gi|5108353|gb|AI740066.1|AI740066
genomic: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttat ... tttcttgtagGCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
EST: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAG GCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAAEST: gi|60343347|gb|DN210320.1|DN210320
genomic: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttat ... tttcttgtagGCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
EST: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAG GCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAAEST: gi|5108373|gb|AI740086.1|AI740086
genomic: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttat ... tttcttgtagGCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
EST: CTGGTTCACGAG GCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAAEST: gi|86467952|gb|DY234322.1|DY234322
genomic: CTGGTTCACGAGgtcagtttat ... tttcttgtagGCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
EST: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACTTGGTTCACGAG GCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAAEST: gi|76920574|gb|DV168239.1|DV168239
genomic: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttat ... tttcttgtagGCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
EST: TCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAG GCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAAEST: gi|60337321|gb|DN204294.1|DN204294
genomic: TCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttat ... tttcttgtagGCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
EST: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAG GCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
genomic: TGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttat ... tttcttgtagGCTCCAGCAGAGGCGGCAGGTTCGCACCAGGCAGGGGCAACAGTTTCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCCCCTGTAGCAATTGGCGGTCGTCAATGTTACGTTGAGGAAAAGAGAGCACCTGGTTCACGAGgtcagtttatatacaaattaatacctaatacttatgcagtgtctgtgacaattatattgttgagtcaaatgaatatgatgattcatcctggtaccagtat
- - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatgaa