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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACAATGCTATCATTGTGCTGGCTATCATTTGTCTTCAGCTGCCATTTGAGTTGGCCTATGCTCATCTATATGAAATTGCAGAAACTGAGGTTATGAGgtgagtagatatggatacttaaaaactatgaattgacttgctagctagcttctctaccatagtacttaatatcagtttcccttgtttttccatttatggctgtcattaaaatctgcactgtattattctgatcaattttatattatacag

Basic information

species Zea mays
transcript GRMZM2G089553_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089553_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g51040.1 (Oryza sativa), 5'ss of exon 8
GGAACAATGCTATCATTGTGCTGGCTATCATTTGTCTTCAGCTGCCATTTGAGTTGGCCTATGCTCATCTATATGAAATTGCAGAAACTGAGGTTATGAGgtgagtagatatggatact--taaaaactatgaa------ttgacttgctagcta-----------------gcttctctac--catagtacttaatatcagtttccc-----ttgtttttccatttatggctgtcattaaaatctgcactgtattattctgatcaattttatattatacag
|||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||||||   | |||| ||    || | |||    ||  | ||||  |      |||| ||   | | |                 |||| | | |  |  | |  || |||||  || |       || ||||    ||||||| |  || |||||| || |   |    |||| ||   |  | | |||| |||
GGAATAATGCTATCATTGTTTTGGCTATCATTTGTCTTCAGCTGCCATTTGAGTTGGCCTATGCTCATCTATATGCGATTACAAAAACTGAGGCGCTAAGgtaagattgtaggaatatcactatgatctattcatgattcttgagttatcaacgatgtgcaattgacctgaagcttattttctcctaattgttttatatctattccttatgttttattttgttgtttatggttaccactaaaatatgaagcat-cagttcttattgctgatgt-ttatgcag

upper sequence: GRMZM2G089553_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G01550.1 (Glycine max), 5'ss of exon 8
GGAACAATGCTATCATTGTGCTGGCTATCATTTGTCTTCAGCTGCCATTTGAGTTGGCCTATGCTCATCTATATGAAATTGCAGAAACTGAGGTTATGAGgtgagtagatatggatacttaaaaactatgaattgacttgctagctagcttctctaccatagtacttaatatcagtttcccttgtttttccatttatggctgtcattaaaatctgcactgtattattctgatcaattttatattatacag
| ||  ||||||||||| |  |    ||||| || || ||| | |||||||||||||| ||||||||||| |||||| ||   ||  ||||  | || | || || |   ||    | ||     || |   |  ||||| | |   | |  |  |  ||| |   | || |   |||      ||| |   | | ||  |||  |                                            
GAAATGATGCTATCATTATCTTCAGCATCATATGCCTCCAGTTACCATTTGAGTTGGCATATGCTCATCTTTATGAAGTTCTTGATTCTGATATAATTAAgtaagaatgcatac-cattttttttctttacttctacttgtttgt--gttaattga--atattctgttatttttatttttggaatttctttctctgtg-ttgttct--------------------------------------------

upper sequence: GRMZM2G089553_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G20980.1 (Glycine max), 5'ss of exon 8
GGAACAATGCTATCATTGTGCTGGCTATCATTTGTCTTCAGCTGCCATTTGAGTTGGCCTATGCTCATCTATATGAAATTGCAGAAACTGAGGTTATGAGgtgagtagatatggatacttaaaaactatgaattgacttgctagctagcttctctaccatagtacttaatatcagtttcccttgtttttccatttatggctgtcattaaaatctgcactgtattattctgatcaattttatattatacag
| ||  ||||||||||| |  |    || || || || ||| | |||||||||||||| ||||||||||| |||||| ||   ||  ||||  | || | || ||    || | ||  ||     || ||  |  ||||| |||   | |  |  |  ||| |   | || |   |||      ||| |   | |  |  | |  |                                            
GAAATGATGCTATCATTATCTTCAGCATTATATGCCTCCAGTTACCATTTGAGTTGGCATATGCTCATCTTTATGAAGTTCTTGATTCTGATATAATTAAgtaag--actacgtatcatttttttctgtgcttctacttgttagt--gttaattga--atattctgttatttttatttttggaatttctttctctg-gattattctc-------------------------------------------