1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCGTATCTCTTTCAACTATTGGCAGAAGTACTCTCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTGAAGTCCTGgtagtgtttctctcctgaatgacatgtgcttgttgtattattttaaccactataggtatgcttagactcgtgtatgatttgtcgaatag
species | Zea mays |
transcript | GRMZM2G086934_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GACCTGCCTGTGGCTAAGAATCTTAAGTCCTG GTATGACTCTGAAGGCAAAGATACTTCACTGGCACTAATCAGTGCAGAAGTEST: gi|67023291|gb|CO452040.1|CO452040
genomic: GACCTGCCTGAGGCTAAGAATCTGAAGTCCTGgtagtgtttc ... tgtcgaatagGTATGACTCTGAAGGCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGT
EST: ACTCTCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTTAAGTCCTG GTATGACTCTGAAGGCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGTEST: gi|211282783|gb|FL192974.1|FL192974
genomic: ACTCTCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTGAAGTCCTGgtagtgtttc ... tgtcgaatagGTATGACTCTGAAGGCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGT
EST: ACTCTCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTGAAGTCCTG GTATGACTCTGAAGGCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGCEST: gi|32914104|gb|CF018916.1|CF018916
genomic: ACTCTCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTGAAGTCCTGgtagtgtttc ... tgtcgaatagGTATGACTCTGAAGGCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGT
EST: ACTCTCGAGATTAATCCTGACTTGCCTGAGGCTAAGAATCTTAAGTCCTG GTATGACTCTGAAGGCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGT
genomic: ACTCTCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTGAAGTCCTGgtagtgtttc ... tgtcgaatagGTATGACTCTGAAGGCAAAGATACTTCACTGGCACCAATCAGTGCAGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTATCTCTTTCAACTATTGGCAGAAGTACTCTCGAGATTAATCCTGACCTGCCTGAGGCTAAGAATCTGAAGTCCTGgtagtgtttctctcctgaatgacatgtgcttgttgtattattttaaccactataggtatgcttagactcgtgtatgatttgtcgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG