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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTTACCGAACAAATTGCAGATAGAATTAGTTCGGACGGCGGAGGCGCTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattttaaatcagttcattcattgtgccaaaagtaaattcaaaatgttgcctgtttggtactactgcaacatatattcttgaagctggaagctag...

Basic information

species Zea mays
transcript GRMZM2G086052_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086052_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g40620.2 (Oryza sativa), 5'ss of exon 8
GGAGCTTACCGAACAAATTGCAGATAGAATTAGTTCGGACGGCGGAGGCGCTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattttaaatcagttcattcattgtgccaaaagtaaattcaaaatgttg-cctgtttggtactactgcaacatatattcttgaagctggaagctag-----
|||| | || ||||| ||||||||||||||||| ||||| || || || || ||||| |||||||| |||||| |||||||||| || |||||||| ||||||||||| ||||||  |||   | | ||  |  ||  | ||  ||      || ||  |   |  ||| |||  | ||||   || ||  |     ||||     
GGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGgtttggatattaaatttgtt---ttactgcac--aatatgaacccatggctctgtccaatcctggtctaatgcctc-tataacattaaatttatgtcctagatcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048588|gb|EB159006.1|EB159006
EST:     AAAAGGGAATAGTGTCGGATAGTCTTCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCGGGCTCCGCT
genomic: AAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|22542289|gb|BU092727.1|BU092727
EST:     CTCTTATTATTGACTATGGAAAAAACGGAATAGTATCCAATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|211258233|gb|FL463465.1|FL463465
EST:     GGAAAAAACGGAATAGTATCCAATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: GGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|76015304|gb|DT942474.1|DT942474
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|60359085|gb|DN226058.1|DN226058
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|71313521|gb|DR793328.1|DR793328
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|26559508|gb|CA831743.1|CA831743
EST:     CTCTTATTATTGACTATGGAAAAAACGGAATAGTATCCAATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|71326242|gb|DR799815.1|DR799815
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|87156799|gb|DY401588.1|DY401588
EST:     CTCTTATTATTGACTATGGAAAAAACGGAATAGTATCCAATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|78090508|gb|DV518882.1|DV518882
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|74243641|gb|DT651555.1|DT651555
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|78108017|gb|DV526435.1|DV526435
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|71297895|gb|DR784918.1|DR784918
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT