1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCATACAGTTCTCCCCGAAGCTCTTGAAAAATGGTCACAAATTGTGATGAGGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGGgtgattttcatgccacatttactttttctatgaacttcagtcattgcacaagctcacaagttgtgccactggtttgcag
species | Zea mays |
transcript | GRMZM2G085577_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGG TTCAAAGAATTGGTAATCTCCAAACATAAGGAAATGGAGGGAAAAATCGATEST: gi|94480423|gb|EB709381.1|EB709381
genomic: GGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGGgtgattttca ... tggtttgcagTTCAAAGAATTGGTAATCTCCAAACATAAGGAAATGGAGGGAAAAATCGAT
EST: GGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGG TTCAAAGAATTGGTAATCTCCAAACATAAGGAAATGGAGGGAAAAATCGATEST: gi|76924590|gb|DV170029.1|DV170029
genomic: GGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGGgtgattttca ... tggtttgcagTTCAAAGAATTGGTAATCTCCAAACATAAGGAAATGGAGGGAAAAATCGAT
EST: GGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGG TTCAAAGAATTGGTAATCTCCAAACATAAGGAAATGGAGGGAAAAATCGATEST: gi|91877192|gb|EB407149.1|EB407149
genomic: GGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGGgtgattttca ... tggtttgcagTTCAAAGAATTGGTAATCTCCAAACATAAGGAAATGGAGGGAAAAATCGAT
EST: GGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGG TTCAAAGAATTGGTAATCTCCGAACATAAGGAAATGGAGGGAAAAATCGAT
genomic: GGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGGgtgattttca ... tggtttgcagTTCAAAGAATTGGTAATCTCCAAACATAAGGAAATGGAGGGAAAAATCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATACAGTTCTCCCCGAAGCTCTTGAAAAATGGTCACAAATTGTGATGAGGAAATTACTTCCCCGACACATGGAAATTATTGAGGAAATTGACAAGCGGgtgattttcatgccacatttactttttctatgaacttcagtcattgcacaagctcacaagttgtgccactggtttgcag
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