1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CACAGTACTTGAAGCCGATATTGTTGTTGTCGGTGTTGGAGGCAGACCATTGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgcttccgattcatcatttttcaactccgagcagatcaccgcagataatactagggttgttttaataaacatgtgttagtgatgatgctattt...
species | Zea mays |
transcript | GRMZM2G084881_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|213174582|gb|FM195806.1|FM195806
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTTCTGGAGTATATGCCATTGGTGATEST: gi|67015015|gb|CO443764.1|CO443764
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|32847319|gb|CD987000.1|CD987000
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|60343226|gb|DN210199.1|DN210199
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|74236615|gb|DT644529.1|DT644529
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|67020428|gb|CO449177.1|CO449177
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|60672306|gb|DN475070.1|DN475070
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|149082322|gb|EE171505.2|EE171505
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: AAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|32865212|gb|CF004894.1|CF004894
genomic: AAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|60351729|gb|DN218702.1|DN218702
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|32857765|gb|CD997446.1|CD997446
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|4646790|gb|AI621865.1|AI621865
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|37395261|gb|CF634910.1|CF634910
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|18648970|gb|BM497789.1|BM497789
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTACCTGGAGTATATGCCATTGGTGATEST: gi|60350416|gb|DN217389.1|DN217389
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|37381442|gb|CF627607.1|CF627607
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCC-TTGNAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAEST: gi|60345769|gb|DN212742.1|DN212742
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTG-AAACAAGCGTTCCTGGAGTATATGCCATTGGTGA
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|14243864|gb|BG841582.2|BG841582
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAEST: gi|211263515|gb|FL023464.1|FL023464
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCC-TTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGA
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTTGGTGAEST: gi|211263517|gb|FL023466.1|FL023466
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATT-GGTGA
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTACCTGGAGTATATGCCATTGGTGATEST: gi|211265947|gb|FL023470.1|FL023470
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|211265946|gb|FL023469.1|FL023469
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCTTGGAGTATATGCCATTGGTGATEST: gi|32830966|gb|CD970644.1|CD970644
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|60339425|gb|DN206398.1|DN206398
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|67015610|gb|CO444359.1|CO444359
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|148935311|gb|EC879352.2|EC879352
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: GTTGCTGGGGAGAAAGGG-GGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|60399037|gb|DN231853.1|DN231853
genomic: GTTGCTGAGGAG-AAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|211188435|gb|FL445804.1|FL445804
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: GACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGG-GGCATTCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAEST: gi|14204226|gb|BG837903.1|BG837903
genomic: GACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGG-AATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGA
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGATEST: gi|67018255|gb|CO447004.1|CO447004
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGG-TCAAGTTGCTGAGGAGAAGGGTGGA-TCAAG ACTGACGCTTC-TTTGAA-CAAGCGT-CCTGGAGT-TATGCCATTGGTGATEST: gi|51592884|gb|CV072030.1|CV072030
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
EST: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAG ACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGCGAT
genomic: TGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgc ... ttccatgcagACTGACGCTTCCTTTGAAACAAGCGTTCCTGGAGTATATGCCATTGGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAGTACTTGAAGCCGATATTGTTGTTGTCGGTGTTGGAGGCAGACCATTGACTACTCTCTTCAAGGGTCAAGTTGCTGAGGAGAAGGGTGGAATCAAGgttactttgcttccgattcatcatttttcaactccgagcagatcaccgcagataatactagggttgttttaataaacatgtgttagtgatgatgctattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaca