1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGACAGGTCTACATCCCAGAGATCAACTATGTCTTGATGGTTTTGTGTGTAGCTGTTACAGCTATTTTCCAAACTACAGAAAAGATTGGCAATGCATATGgtaaattctcaattctagaaacaagcatccctcccatcccaggatataattaaactaaaaaaatgcagtatctgaatattcaatttttacagaaattata...
species | Zea mays |
transcript | GRMZM2G084779_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGCTGTTACAGCTATTTTCCAAACTACAGAAAAGATTGGCAATGCATATG GTATTGCTGTTGTCTTTGTGATGTTTATAACAACACTTCTAGTCACTTTAGEST: gi|24934555|gb|CA452773.1|CA452773
genomic: AGCTGTTACAGCTATTTTCCAAACTACAGAAAAGATTGGCAATGCATATGgtaaattctc ... tactgtgcagGTATTGCTGTTGTCTTTGTGATGTTTATAACAACACTTCTAGTCACTTTAG
EST: AGCTGTTACAGCTATTTTCCAAACTACAGAAAAGATTGGCAATGCATATG GTATTGCTGTTGTCTTTGTGATGTTTATAACAACACTTCTAGTCACTTTAGEST: gi|24934578|gb|CA452796.1|CA452796
genomic: AGCTGTTACAGCTATTTTCCAAACTACAGAAAAGATTGGCAATGCATATGgtaaattctc ... tactgtgcagGTATTGCTGTTGTCTTTGTGATGTTTATAACAACACTTCTAGTCACTTTAG
EST: AGCTGTTACAGCTATTTTCCAAACTACAGAAAAGATTGGCAATGCATATG GTATTGCTGTTGTCTTTGTGATGTTTATAACAACACTTCTAGTCACTTTAG
genomic: AGCTGTTACAGCTATTTTCCAAACTACAGAAAAGATTGGCAATGCATATGgtaaattctc ... tactgtgcagGTATTGCTGTTGTCTTTGTGATGTTTATAACAACACTTCTAGTCACTTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAGGTCTACATCCCAGAGATCAACTATGTCTTGATGGTTTTGTGTGTAGCTGTTACAGCTATTTTCCAAACTACAGAAAAGATTGGCAATGCATATGgtaaattctcaattctagaaacaagcatccctcccatcccaggatataattaaactaaaaaaatgcagtatctgaatattcaatttttacagaaattata
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaat