1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGGGAGCACAAACAGAAACTGAACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtcgaagtaattaacttgtgctgccagatttatatttctcatatttaattcacatgtataatgatatatgatgttggatgaaaaaattataga...
species | Zea mays |
transcript | GRMZM2G083716_T05 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AATTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|148983128|gb|EE029059.2|EE029059
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: CCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|149099157|gb|EE185182.2|EE185182
genomic: CCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: TGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|60342862|gb|DN209835.1|DN209835
genomic: TGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|211360073|gb|FL471663.1|FL471663
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGGGGAGGGTGCACTCTTTTGCGGEST: gi|211268071|gb|FL357474.1|FL357474
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGGGGAGGGTGCACTCTTTTGCGGEST: gi|120480889|gb|EH211078.1|EH211078
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGEST: gi|71764883|gb|DR962820.1|DR962820
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGG-AAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCG
EST: GTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGCGGEST: gi|148961769|gb|EE012546.2|EE012546
genomic: GTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTTTTTTGCGG
genomic: AATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGAGCACAAACAGAAACTGAACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtcgaagtaattaacttgtgctgccagatttatatttctcatatttaattcacatgtataatgatatatgatgttggatgaaaaaattataga
- - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG