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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctagttttaatttatctacattatattttgaacaatatatttctgcagtttctctttgtatttttgctacaggacatgttctttcttagaatgc...

Basic information

species Zea mays
transcript GRMZM2G083344_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083344_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g15160.1 (Oryza sativa), 5'ss of exon 8
ACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctagtttta-----atttatctacattatattttgaacaatatatttctgcagtttctctttgtatttttgctacaggacatgttctttcttagaatgc
|||||||||||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||     ||  || |   ||| || || |||| |  |  | |   ||  |   | |   | | | |||   | | |   | ||  |      
ACTGACATGGATAGCACCAACCTGTATGCGTACATCTCAATAATTGCTCTCCTTGTCTGCATCCCTCCTGCAATTATTgtaagtctaattttatctttatgcatgtttgttacatatttaacacttcagctgt-tggtagcatataggtctatagatacctaaaaaggcatatcgcaac----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8665718|gb|BE186534.1|BE186534
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|71760100|gb|DR958037.1|DR958037
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|32928246|gb|CF033058.1|CF033058
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|32165070|gb|CD670388.1|CD670388
EST:     TTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: TTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|71328475|gb|DR800887.1|DR800887
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|76930049|gb|DV172255.1|DV172255
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|71768355|gb|DR966292.1|DR966292
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|32935156|gb|CF039968.1|CF039968
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|32862760|gb|CF002442.1|CF002442
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
EST: gi|166466843|gb|EG171627.1|EG171627
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGC
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGC
EST: gi|32837170|gb|CD976848.1|CD976848
EST:     CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT                         ATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA
genomic: CATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATTgtaagcctag ... caactttcagATTGAAGGACCTCAATTAGTGCAGCATGGTTTTAAAGATGCAATTGCCAAA