1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTCTTTGCCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgctaagccttgcgctctaagttctttcctatgctcgtgtttcaaacgtcatctcgatgatatttgagtaatatgaactgtccag
species | Zea mays |
transcript | GRMZM2G083095_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|148987523|gb|EE031385.2|EE031385
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGGGGGTTGACCAG ATCATTATGGGGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGGEST: gi|33092559|gb|CF052553.1|CF052553
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|211519526|gb|FL441902.1|FL441902
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|113703848|gb|EE681352.1|EE681352
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|60357186|gb|DN224159.1|DN224159
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|60396537|gb|DN229406.1|DN229406
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCEST: gi|60358886|gb|DN225859.1|DN225859
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGC
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|7135329|gb|AW498031.1|AW498031
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCCCCGTGCTGCGGGTTGCCCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|7137645|gb|AW499199.1|AW499199
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|6539092|gb|AW225231.1|AW225231
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|211337113|gb|FK966354.1|FK966354
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAMG--G-CAAGGAGGTCCAAGAAGAGATGCCCAGCCTGGEST: gi|211337111|gb|FK966352.1|FK966352
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCA-GGAGGTCCAAGAAGAGATGCCCAGCCTGG
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAMG--GTCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|33094754|gb|CF054748.1|CF054748
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|13177835|gb|BG349018.1|BG349018
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|4314488|gb|AI461542.1|AI461542
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|13178118|gb|BG349376.1|BG349376
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|71431586|gb|DR812636.1|DR812636
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|5688514|gb|AI941529.1|AI941529
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|148972050|gb|EE022890.2|EE022890
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGCCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|211337115|gb|FK966356.1|FK966356
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|78024594|gb|DV492981.1|DV492981
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|91053532|gb|EB163950.1|EB163950
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|211525262|gb|FL432917.1|FL432917
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|110194417|gb|EC876315.1|EC876315
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|211337114|gb|FK966355.1|FK966355
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|5919524|gb|AW054621.1|AW054621
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|60337628|gb|DN204601.1|DN204601
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|5006194|gb|AI712256.1|AI712256
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|149105114|gb|EE290597.2|EE290597
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCCCCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|10450915|gb|BE924839.1|BE924839
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCTATAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|21759912|gb|BQ635453.1|BQ635453
genomic: CCTA-AAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGTEST: gi|4885786|gb|AI676906.1|AI676906
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
EST: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAG ATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
genomic: CCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgc ... aactgtccagATCATTATGGCGAAGCCGGCAGGAGGTCCAAGAAGAGATGCCCAGCCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTTGCCCTAAAATATTCTGCCGATGCCGCATGCACCGTGCTGCGGGTTGACCAGgtatgactgctaagccttgcgctctaagttctttcctatgctcgtgtttcaaacgtcatctcgatgatatttgagtaatatgaactgtccag
- - - - - - - - - - - - - - - - - - - - TGCTGC