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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTCCCAAGATGTTTATCCCTGTACTATTTGGACATGGTCTGAATGATATGTTTATTCAGCCTCACCATTGTGATCGTATTCACCAGGCATATGGGgtaaatgtttattcagccctcttcataaaagttaactagcatattgttatggtcgggcagacatacaagagaagggataaggatggtgagttctaggccg...

Basic information

species Zea mays
transcript GRMZM2G081642_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081642_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 5'ss of exon 8
TTGGCTCCCAAGATGTTTATCCCTGTACTATTTGGACATGGTCTGAATGATATGTTTATTCAGCCTCACCATTGTGATCGTATTCACCAGGCATATGGGgtaaatgtttattcagccctcttcataaaagttaactagcatattgttatggtcgggcagacatacaagagaagggataagga----tggtgagttctaggccg------------------------------------
|| |||||||||| |||||| |||| | | ||||| |||| |   ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||    | ||  ||     || || || |  |   |  ||    | |         | |     ||  ||  |     ||     || |||    ||                                         
TTCGCTCCCAAGACGTTTATTCCTGCATTGTTTGGTCATGCTTCAAATGACATGTTCATTCAGCCTCACCACTGTGATCGTATTCACCAGGCGTATGGGgtaatgcataatgtagtttgttttattaatgccactcaaaatcaaataaataatacataaatcgctaattgactgttcctggcttcctgctgaagaatacattattatttgtttaaaattaaatcatgtttattgtacag