Sequence
atgc intronic sequence ATGC exonic sequenceATGCTCAAGTTTCCAGGGAAGAAAGGTCATTCCGGCTGTGGATTAACAGCCTTGGAATTTCAACTTACATCAACAATGTGTTTGAAGACCTTAGAAATGGgtaggacatacttgtatccatcttaatatgtgaacaagcacattctttgtcttaatacttcatccttgagttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G081380_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g33080.1 (Oryza sativa), 5'ss of exon 8
ATGCTCAAGTTTCCAGGGAAGAAAGGTCATTCCGGCTGTGGATTAACAGCCTTGGAATTTCAACTTACATCAACAATGTGTTTGAAGACCTTAGAAATGGgtaggacatac-------ttgtat----ccatcttaatatgtgaacaagcacattctttgtcttaatacttcatccttgagttg-tag
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ATGCTCAAGTTTCGAGGGAAGAGAGGTCATTCCGGTTATGGATTAATAGCCTTGGAATTTCTACATACATCAACAATGTGTTTGAGGATCTTAGAAATGGgtaggtcttacattaaagttatctccccccatcttaatcgtcacccaagccgatgctctatct-gatattttgttctggggatgacag
upper sequence: GRMZM2G081380_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G45800.1 (Glycine max), 5'ss of exon 9
ATGCTCAAGTTTCCAGGGAAGAAAGGTCATTCCGGCTGTGGATTAACAGCCTTGGAATTTCAACTTACATCAACAATGTGTTTGAAGACCTTAGAAATGGgtagga---catactt-----gtatccatcttaatatgtgaacaagcacattctttgtcttaatacttcatccttg-agttgtag---------------
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ACACCCAAGACTCTAGAGAAGAGAGAGCATTTCGCCTCTGGATTAATAGCCTTGGAAATTCAATATACATCAACAATGTCTTTGAGGATGTCAGAAATGGgtagagtatcatgctttcactacatctcttatagattttaaatataaactggtcttgttactgtctataatctatataattaaaaactatttgattgatt
upper sequence: GRMZM2G081380_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA03G22450.1 (Glycine max), 5'ss of exon 10
ATGCTCAAGTTTCCAGGGAAGAAAGGTCATTCCGGCTGTGGATTAACAGCCTTGGAATTTCAACTTACATCAACAATGTGTTTGAAGACCTTAGAAATGGgtagg------acat----acttgtatccatcttaatatgtga------acaagcacattctttgtcttaa-tacttcatccttgagttgtag-------
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ACACCCAAGACTCTAGAGAAGAAAGAGCATTTCGCCTATGGATGAATAGCCTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCCGAAATGGgtgaatatctcacatttttactagttctcttgtttacattttatattatgcttgaactggttttgtcaaaagcatttttgtatagaattgaaactactagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60340714|gb|DN207687.1|DN207687EST: CTTGGAATTTCAACTTACATCAACAATGTGTTTGAAGACCTTAGAAATGG ATGGGTTCTCCTTGAGGTGATTGACAAGATTGCTCCAGGCTCAGTTAATTG
genomic: CTTGGAATTTCAACTTACATCAACAATGTGTTTGAAGACCTTAGAAATGGgtaggacata ... tgagttgtagATGGGTTCTCCTTGAGGTGATTGACAAGATTGCTCCAGGCTCAGTTAATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCTCAAGTTTCCAGGGAAGAAAGGTCATTCCGGCTGTGGATTAACAGCCTTGGAATTTCAACTTACATCAACAATGTGTTTGAAGACCTTAGAAATGGgtaggacatacttgtatccatcttaatatgtgaacaagcacattctttgtcttaatacttcatccttgagttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA