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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTGgtacgctcttaacactctgctaattcattttatgttcaacatgaggaaagaaaaaatatatatagcgagccaagtgtctgaccactccattctacctgctacctcag

Basic information

species Zea mays
transcript GRMZM2G080375_T04
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234372|gb|DT642286.1|DT642286
EST:     GTACGCGACTCTAGCTAGCCGTGATTG-G                         GACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGG
genomic: GTACGCGACTCTAGCTAGCCGTGA-TGTGgtacgctctt ... gctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGG
EST: gi|116813643|gb|EC856113.1|EC856113
EST:     GTTTTATCGCGATGTACGCAACTCTAGCTAGCCGTGATGTG                         GACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGG
genomic: GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTGgtacgctctt ... gctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGG
EST: gi|211450005|gb|FL281917.1|FL281917
EST:     GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTG                         GACTGTTGTTTAATCCCGGAGTCACC
genomic: GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTGgtacgctctt ... gctacctcagGACTGTTGTTTAATCCCGGAGTCACC
EST: gi|211450006|gb|FL281918.1|FL281918
EST:     GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTG                         GACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGGA
genomic: GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTGgtacgctctt ... gctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGGA