Sequence
atgc intronic sequence ATGC exonic sequenceGTCCTGGGTGGCGTATATGCAAGTAACACATCTGGTATTACAGCTCAACATCTGGAATGGgtgagaaccttaccggtccattctttgactgatatattggcttataatctactcttgtatgccaaacatgactggcatggtttgacctattttctcattttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G079452_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g23790.2 (Oryza sativa), 5'ss of exon 8
GTCCTGGGTGGCGTATATGCAAGTAACACATCTGGTATTACAGCTCAACATCTGGAATGGgtgagaaccttaccggtccattctttgactgatatattggcttataatctactcttgtatgccaaacatgactggcatggtttgacctattttctcattttag
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GTTCTAGGTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAATGGgtgagatacctgc---ttcgttctttt-------caatgg-ttatg-tccacttgtctg-gaaaggggaaaatcatgcggattgccttattttcccgttgtag
upper sequence: GRMZM2G079452_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g23790.3 (Oryza sativa), 5'ss of exon 8
GTCCTGGGTGGCGTATATGCAAGTAACACATCTGGTATTACAGCTCAACATCTGGAATGGgtgagaaccttaccggtccattctttgactgatatattggcttataatctactcttgtatgccaaacatgactggcatggtttgacctattttctcattttag
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-------GTGGTATATATGCAAACAACACATCTGGCATTACAGCACAACATCTAGAATGGgtgagatacctgc---ttcgttcttt--tcaat------ggttatg-tccacttgtctg-gaaaggggaaaatcatgcggattgccttattttcccgttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71774789|gb|DR972667.1|DR972667EST: GCGTATATGCAAGTAACACATCTGGTATTACAGCTCAACATCTGGAATGG GTACATCAGACAACACTCAAAATTCTTCAGGAAATGGCCTTCTAGCATTGT
genomic: GCGTATATGCAAGTAACACATCTGGTATTACAGCTCAACATCTGGAATGGgtgagaacct ... ctcattttagGTACATCAGACAACACTCAAAATTCTTCAGGAAATGGCCTTCTAGCATTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCTGGGTGGCGTATATGCAAGTAACACATCTGGTATTACAGCTCAACATCTGGAATGGgtgagaaccttaccggtccattctttgactgatatattggcttataatctactcttgtatgccaaacatgactggcatggtttgacctattttctcattttag
- - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - AGCTCA