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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCAATACGGGCAATGCTTGGAGGACGTGTAAGATTTGTTCTTTGTGGTGGTGCACCTTTATCAGGTGACACACAAAGATTCATGAATATATGTCTAGGgtaatgtcttctgccctgcttatctcaaattacaatttattatcttagccgatcgaatgtatggtatagtgcgattcttagttatggaacagtatatcgt...

Basic information

species Zea mays
transcript GRMZM2G079236_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079236_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g25310.2 (Oryza sativa), 5'ss of exon 7
AACCAATACGGGCAATGCTTGGAGGACGTGTAAGATTTGTTCTTTGTGGTGGTGCACCTTTATCAGGTGACACACAAAGATTCATGAATATATGTCTAGGgtaatgtcttctgccctgcttatctcaaattacaatttattatct-tagccgatcgaatgtatggtatagtgcgattcttagttatggaacagtatatcgt-
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AACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAGTGACACACAAAGATTTATGAATATATGTCTTGGgtaatttcttttgtcctatttggattatcttaaatttaaccatttgcaatcagtgagatgtcaactgaagaagtattctt--ccaaaaatttccactgagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32803911|gb|CD956147.1|CD956147
EST:     GGTGCACCTTTATCAGGTGACACACAAAGATTCATGAATATATGTCTAGG                         GTCCATGTTATCCTGAATCTCAGTCATTCTCAGTTGGATTAGTTCATCCTT
genomic: GGTGCACCTTTATCAGGTGACACACAAAGATTCATGAATATATGTCTAGGgtaatgtctt ... ttgggtccagGTCCATGTTATCCTGAATCTCAGTCATTCTCAGTTGGATTAGTTCATCCTT