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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGCATCAAGGAAGACTTCAAATCAGATTTACATGCTGTTGATTATTCTCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTGgtaaggaaactagttgacttcttaatttgtttatttgtaaaactgttaataatataatgtgctgctccag

Basic information

species Zea mays
transcript GRMZM2G078576_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g56630.1 (Oryza sativa), 5'ss of exon 9
TAATGCATCAAGGAAGACTTCAAATCAGATTTACATGCTGTTGATTATTCTCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTGgtaaggaaactagttgacttcttaatttgtttatttgtaaaactgttaataatataatgtgctgctccag
 ||||||||||| ||||| || |||||||| |||||||| |||||  |||| || || |||||||||||||||||||||||||||||||| |||||||||||||| ||  |  || |||   || ||   |||||   |||| |||||||  | | ||||  |  || ||
CAATGCATCAAGAAAGACCTCCAATCAGATATACATGCTATTGATAGTTCTTCTTATACTCAGTCAAGATTCAACCTTCAATGCTAGTGTACACAAATTGgtaagcaagttgatttactatatatttatattattca-aaaagtgttaatgcttttatgtattattctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211241026|gb|FL065527.1|FL065527
EST:     TCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTG                         GTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCT
genomic: TCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTGgtaaggaaac ... gctgctccagGTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCT
EST: gi|7304677|gb|AW600616.1|AW600616
EST:     TCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTG                         GTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCT
genomic: TCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTGgtaaggaaac ... gctgctccagGTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCT