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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAATGATGAGATCCCAGTTCTGTTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATACGTCTTGGTTCGAACAGACTTGGATACTTTGgtatgtttttgttcgcctttagggatgaaagtgggtatctgaactgttaggataaatttaatattttatatagatgtgcataaaattttataccgttttt...

Basic information

species Zea mays
transcript GRMZM2G078576_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 8
CTTAAATGATGAGATCCCAGTTCTGTTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATACGTCTTGGTTCGAACAGACTTGGATACTTTGgtatgtttttgttcgcctttagggatgaaagtgggtatctgaactgttaggataaatttaatattttatatagatgtgcataaaattttataccgttttt--------
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CTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAACAGACCTGGATACTTTGgtatgttagc--------ttaataacaatatttctgaaccatatttattggagcacgagggcattcaatacatatctggacatatttgttttgggttcataaaactgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211241026|gb|FL065527.1|FL065527
EST:     ACTGTGACTTTCAGGAATACGTCTTGGTTCGAACAGACTTGGATACTTTG                         TTGATGCCTATCTTGGAAACGCTATATAATGCATCAAGGAAGACTTCAAAT
genomic: ACTGTGACTTTCAGGAATACGTCTTGGTTCGAACAGACTTGGATACTTTGgtatgttttt ... attttaatagTTGATGCCTATCTTGGAAACGCTATATAATGCATCAAGGAAGACTTCAAAT