Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCAAGTAACACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATAgtaagggttctatatttaattcatcaactacagtctgacaaagtattgcctgtttgacattcctgtggttatatctgcatggaatcacataaattgtaaaaaaaacatttatgatgtatctgttagtctagcatcactctttccctgttataagttagtttgattgtactcactag

Basic information

species Zea mays
transcript GRMZM2G078458_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 5'ss of exon 8
ACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCAAGTAACACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATAgtaagggttctatatttaattcatcaactac--agtct-gacaaagtat-tgcctgtttgacattcctgtggttatatctgcatggaatcacataaattgtaaaaaaaacatttatgatgtatctgttagtctagcatcactctttccctgttataagttagtttgattgtactcactag
||||||||| ||   ||||   |||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||| || || || |||||||||||| ||||||     | || || || ||   ||| | ||| || ||| |   ||   ||   | || |  | |  | |  |   ||  |   ||| ||||                                                                              
ACAGCTAAGAATATCAGTGGCAATGATAATCCTAAATCAAGTAATACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCTGGAATCGACTTTTGTAATCATAgtaagagttctaataaaagtttatgaattatgtagtatagacgaaatatctagttggcagatcattctatattcaacttttgacaaaaaaa---aaactgtag-----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71298470|gb|DR785213.1|DR785213
EST:     GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCTATCATA                         ATGTAAAGGCACTGGGCA-CATGGGAAAGT-GATTCTGTGGGAAATGCTAC
genomic: GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATAgtaagggttc ... tactcactagATGTAAAGGCACTGG-CAACATGGGAA-GTTGATTCTGTGGGAAATGCTAC
EST: gi|78108131|gb|DV526549.1|DV526549
EST:     GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATA                         ATGTAAAGGCACTGGCAACATGGGAAAGT-GATTCTGTGGGAAATGCTACC
genomic: GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATAgtaagggttc ... tactcactagATGTAAAGGCACTGGCAACATGGGAA-GTTGATTCTGTGGGAAATGCTACC
EST: gi|148973503|gb|EE024603.2|EE024603
EST:     GTCAATTTGGGGTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATA                         ATGTAAAGGCACTGGCAACATGGGAAAGT-GATTCTGTGGGAAATGCTACC
genomic: GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATAgtaagggttc ... tactcactagATGTAAAGGCACTGGCAACATGGGAA-GTTGATTCTGTGGGAAATGCTACC