ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GCAACAGTTGCCTATTATTTACTCTTGGACAATAGGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtgggattttattttgttttgtatttccagatgttgattgtgagttgttcagtaattctgatgcataatttcttgctaattttctgtcttgttttatgtggtctctag

Basic information

species	Zea mays
transcript	GRMZM2G077278_T01
intron #	8
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G077278_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g45420.3 (Oryza sativa), 5'ss of exon 8

GCAACAGTTGCCTATTATTTACTCTTGGACAATAGGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggg---attttattttgttttgtatttccagatgttgattgtgagttgttcagtaat---------tctgatgcat----aatttcttgctaattttctgtcttgttttatgtggtctctag
|| ||||||||||| |||||||| |||||||||||||| || ||||||||||| || |||||| ||||||| || |||||||||||  ||      || |   | | |  | |||| |    | ||||||   | ||  |    |||          |||  |||     || ||  || ||||||  ||  ||| ||| |||| ||     
GCGACAGTTGCCTACTATTTACTATTGGACAATAGGCTGCGCACAACCAGTGGCTACCTTGGAGCTGAGTTCCATGAATCTATGgtatgtcaactcatctctctctctcatttattgctttctattgattccaaattcctggcaaatgtgctgttccctgtagcactacaaagtttatgataatttggtgctttgctttctgtgatccag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|31351266|gb|CD435623.1|CD435623

EST:     GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTCTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|6307878|gb|AW163845.1|AW163845

EST:     GGCTTCGTACAACCAGGGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTCTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|211090137|gb|FL283399.1|FL283399

EST:     GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|76934830|gb|DV174040.1|DV174040

EST:     GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|76933421|gb|DV173441.1|DV173441

EST:     GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|15312951|gb|BI478479.1|BI478479

EST:     GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTCTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|67028292|gb|CO457041.1|CO457041

EST:     GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|211429825|gb|FL327475.1|FL327475

EST:     GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|76012619|gb|DT939789.1|DT939789

EST:     TACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: TACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|32835075|gb|CD974753.1|CD974753

EST:     ACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: ACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

EST: gi|6223810|gb|AW154941.1|AW154941

EST:     GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATG                         GACTCATCTTTCTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA
genomic: GGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 136

GCAACAGTTGCCTATTATTTACTCTTGGACAATAGGCTTCGTACAACCAGTGGTTATCTTGGATCTGAGTTTCAAGAATCTATGgtgagtggga ... tggtctctagGACTCATCTTTGTCTCAAGTAATCGCTGAAACACCAACTTCAGCAACTGAACTTCGTCAGCATGGGTTTTCAGAATCTCCAGGTTCTGGCTTGAGGCAGC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 137

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 210