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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGCCCACAGAAAGTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaacatatgaattaatttctaagttcttccatagcccgtaatatctatgcatttttattttccatgacatgcttttttattgaactatcatgcag

Basic information

species Zea mays
transcript GRMZM2G077233_T06
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077233_T06 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g18630.1 (Oryza sativa), 5'ss of exon 8
ACAAGCCCACAGAAAGTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaacatatgaattaatttctaagttcttccatagcccgta-atatctatgcatttt---tattttccatgacatgcttttttattgaactatcatgcag
 |||||||   |||| ||||| |||||||||||||||||| |||||||||| | | ||||||||||| ||| ||||| ||  || |  || ||| | |   | ||     |  || |   | | ||||      |||||||||||  ||| |||   |||  |  ||| ||
GCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGgtcagcacaacacatacatgacattttaattgccatcttaatatatctatgttcctcctttttgttccctttccatgacagacttgtttcacgaatgaatatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78179647|gb|DV550020.1|DV550020
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|91876412|gb|EB406369.1|EB406369
EST:     TTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: TTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|67023174|gb|CO451923.1|CO451923
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|12047192|gb|BF729331.1|BF729331
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|83278626|gb|DV942634.1|DV942634
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATAGAATCTGTTG-TGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|211384116|gb|FL248479.1|FL248479
EST:     CTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: CTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|60346328|gb|DN213301.1|DN213301
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|76291014|gb|DV030582.1|DV030582
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|60396697|gb|DN229564.1|DN229564
EST:     ATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: ATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|31250410|gb|CD219434.1|CD219434
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|8577168|gb|BE129805.1|BE129805
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|32858947|gb|CD998628.1|CD998628
EST:     GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|6194440|gb|AW146544.1|AW146544
EST:     TGGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: TG-TGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: gi|60348336|gb|DN215309.1|DN215309
EST:     GTATTTGATGGTGCCCATTCTGTCAG                         CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT