1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAGgtaatttcttcgttgcattttcaactctgtgtacattcatgtgtgactctgacataaatcatttgtcgactgaaag
species | Zea mays |
transcript | GRMZM2G074466_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAG ATCAATGAGGATGACCGGAGAGACCATEST: gi|32933778|gb|CF038590.1|CF038590
genomic: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAGgtaatttctt ... cgactgaaagATCAATGAGGATGACCGGAGAGACCAT
EST: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAG ATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGACEST: gi|67010825|gb|CO439574.1|CO439574
genomic: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAGgtaatttctt ... cgactgaaagATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGAC
EST: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAG ATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGACEST: gi|71331763|gb|DR802742.1|DR802742
genomic: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAGgtaatttctt ... cgactgaaagATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGAC
EST: AAGCAGATGTTCAAGC-TCAAGGGGCATACAAAGTGGATAAG ATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGACEST: gi|32850651|gb|CD990332.1|CD990332
genomic: AAGCAGATGTTCAAGCTTCAA-GGGCATACAAAGTGGATAAGgtaatttctt ... cgactgaaagATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGAC
EST: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAG ATCAATGAGGGTGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGACEST: gi|211489771|gb|FL012892.1|FL012892
genomic: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAGgtaatttctt ... cgactgaaagATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGAC
EST: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAG ATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGACEST: gi|211489770|gb|FL012891.1|FL012891
genomic: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAGgtaatttctt ... cgactgaaagATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGAC
EST: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAG ATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGAC
genomic: CGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAGgtaatttctt ... cgactgaaagATCAATGAGGATGACCGGAGAGACCATAATAACAGGTAGTGATGATTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCAAGGGCATACAAAGTGGATAAGgtaatttcttcgttgcattttcaactctgtgtacattcatgtgtgactctgacataaatcatttgtcgactgaaag
- - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA