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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCACAAGCGTGGACGTTGAGGAGCATCTGTACAGGCTAGCAACCAACATGGGCATAACAGTCATCACATCCTCACAAgtaagtatgcatgatactcttgttgtttctcgcctatgcctctcctgctcacttcttgtttgcttcattgcag

Basic information

species Zea mays
transcript GRMZM2G074241_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074241_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g73530.2 (Oryza sativa), 5'ss of exon 25
TGCCACAAGCGTGGACGTTGAGGAGCATCTGTACAGGCTAGCAACCAACATGGGCATAACAGTCATCACATCCTCACAAgtaagtatg--catgatactc--ttgttgtttctcgccta----tgcctctcctgctcacttcttgtttgcttcattgcag---------------------------------------------------------------------------------------------------
||||||||| || || |||||||||||| |||||| | ||||||| |  ||||||||||| |||||||| || ||||||||||||||   |  ||||| |  || |  |  |||  | |    ||  |         || |  | ||   |||  | ||                                                                                                    
TGCCACAAGTGTCGATGTTGAGGAGCATTTGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGTCACAAgtaagtatcatctagatacccacttatcctaactcttcaaatggtgaataaaaaaaaaacatggttttcatttctatccattttgtttctagttgatggtattttgcatcttaagcttacatctttgtcagaagtgaaatttgggttgatgatgcctttctctcatttattcatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71768207|gb|DR966144.1|DR966144
EST:     TGTACAGGCTAGCAACCAACATGGGCATAACAGTCATCACATCCTCACAA                         AGGCCTGCTCTGATTCTCTTCCATTCGTTGGAACTGAAACTCATTGACGGC
genomic: TGTACAGGCTAGCAACCAACATGGGCATAACAGTCATCACATCCTCACAAgtaagtatgc ... ttcattgcagAGGCCTGCTCTGATTCCCTTCCATTCGTTGGAACTGAAACTCATTGACGGC