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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCAGCATGGATTCAGTGATGCCATTGCAAAAGTAGGCTTGACAAAGTTTGTTAGTGACCTATTCTTGGTTGGACTGTTCTACCATCTGTACAACCAGgtaacatgaatcacccgtttagcaattttagctggctttggcttgccacatgaagcctagtatttactgatctaccattttgttgaccaatgaatggtattgcag

Basic information

species Zea mays
transcript GRMZM2G070605_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070605_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g13770.3 (Oryza sativa), 5'ss of exon 8
AATGCAGCATGGATTCAGTGATGCCATTGCAAAAGTAGGCTTGACAAAGTTTGTTAGTGACCTATTCTTGGTTGGACTGTTCTACCATCTGTACAACCAGgtaacatgaatcacccgtttagcaattttagctggctttggcttgccacatgaagcctagtatttactga---tctaccattttgttgaccaatgaatggtattgcag--------------------------------------------------
| |||||||||| || |  ||||| |||||||||||||||||||||||||| |||  |||||| ||||| || |||||||||||||| || || |||||||||||  |  |  |  |    ||||    | |    |     |       ||   |  || || |||  |   |  |   || |||  || |||      | || ||                                                   
ATTGCAGCATGGTTTTAACGATGCAATTGCAAAAGTAGGCTTGACAAAGTTCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtttt-catgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211010423|gb|FL349731.1|FL349731
EST:     TTGTTAGTGACCTATTCTTGGTTGGACTGTTCTACCATCTGTACAACCAG                         ATTGCTACGAACACCTTGGAGCGAGTGGCTCCTCTGACACATGCTGTGGGC
genomic: TTGTTAGTGACCTATTCTTGGTTGGACTGTTCTACCATCTGTACAACCAGgtaacatgaa ... ggtattgcagATTGCTACGAACACCTTGGAGCGAGTGGCTCCTCTGACACATGCTGTGGGC
EST: gi|32851134|gb|CD990815.1|CD990815
EST:     TTGTTAGTGACCTATTCTTGGTTGGACTGTTCTACCATCTGTACAACCAG                         ATTGCTACGAACACCTTGGAGCGAGTGGCTCCTCTGACACATGCTGTGGGC
genomic: TTGTTAGTGACCTATTCTTGGTTGGACTGTTCTACCATCTGTACAACCAGgtaacatgaa ... ggtattgcagATTGCTACGAACACCTTGGAGCGAGTGGCTCCTCTGACACATGCTGTGGGC