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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcatatctcctatgctatcatgctgtggcttctaccattatttcccatgctaagattaatactgctgttgctgcctttttttttctcttaaccca...

Basic information

species Zea mays
transcript GRMZM2G070422_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 8
TTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcatatc------tcctatgctatcatgctgtggcttctaccattatttcccatgcta--agattaatactgctgttgctgcctttttttttctcttaaccca
 | ||||| || ||||||||||| |||||||| ||| | || ||||| ||||||||||  || || |||||||||||||||||||||||||||||||| |||||||| ||        | |||      || ||     |||  |||  ||| |   |  ||   |||| |||   || ||| ||||||||  | |  |         
CTATTGGAGACATCAAGAAGAGGGTATCTTGCTGCACTGTCAGCATCGAGTTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTATAATGAATCCAGgtagtgcttactccgcagttctaactctccacgcctgcacttgaaccgctatcttatacactcctagataaatcaagccgttactgcctttcatatcttt--------

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 8
TTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcatatctcctatgctatcatgctgtggcttctaccattatttcccatgctaagattaatactgctgttgctgcctttttt--tttctcttaaccca
|||||||| || ||  | | ||| |||||||| ||||| |||||||| ||||||||||||||||| || ||  |||| || ||||| ||  |||| || ||     ||| |||| |||  ||| |      |||||| |  ||       ||| ||       ||  |  | |   |  ||||| |  ||| | || |    
TTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGg-----catgtctcttatcttattaaag---ggcttccattatatcacttcatacttccgcatatcattttatcttttacttttatgatttgtttttag---

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 8
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 8
TTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcatatctcct-atgct-atcatgctgtggcttcta--ccattatttcccatgctaagattaatactgctgttgctgcctttttttttctcttaaccca------------------------
 ||||||| || || |||| ||| |||||||||||||| |||||||| ||||||||||| ||||| || ||  ||   ||| ||||||||||||| || || |   ||| | |||  || ||  |  ||   |  ||||    || || ||||  |     |  |   |  |   | || |   || |  | |  ||  |   |                        
CTGTTGGAGACATCCAGAAAAGGTTATCTTGCGGCAATATCTGCATCAAGTTACTCCTACGTTTCTTTACTCAAGTGTTTCATTCCTATAATGAACCCAGgca-cacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacag

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 8
lower sequence: Vv08s0007g06390.t01 (Vitis vinifera), 5'ss of exon 8
TTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcatatctcctatgctatcatgctgtggcttctaccattatttcccatgctaagattaatactgctgttgctgcctttttttttctcttaaccca-------------------------------------------------------------
 |  |||| || |||||||  || |||||||| || ||||||||||| ||||| |||| |||||| |||||  |||| ||||| || ||||||||||| ||||     ||| |||||| |  |  |  | | |  | | | | | ||||      | |  |||    |  | || ||   || ||||| | || ||  |                                                              
CTCCTGGAGACATCAAGAAAGGGATATCTTGCAGCTATTTCTGCATCAAGTTATTCCTTTGTTTCTTTGCTCAAGCATTTCCTCCCAATAATGAATCCAGgta-----tatttcctattccctttttgttttgtcttttcaagtttttcttgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211267877|gb|FL003942.1|FL003942
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|32914780|gb|CF019592.1|CF019592
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAA
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAA
EST: gi|67017641|gb|CO446390.1|CO446390
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTTACATACATTGCATCTGAAAAGGCG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCG
EST: gi|31356384|gb|CD440741.1|CD440741
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTC
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTC
EST: gi|6526869|gb|AW216132.1|AW216132
EST:     NTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|60396705|gb|DN229571.1|DN229571
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|31361470|gb|CD445827.1|CD445827
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAA
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAA
EST: gi|67018992|gb|CO447741.1|CO447741
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATNATGAATCCCC                         GTGGTGCTAGCATCTCTCTTACATACATTGCATCTGAA-GGGCG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCG
EST: gi|67019739|gb|CO448488.1|CO448488
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATNATGAATCCCC                         GTGGTGCTAGCATCTCTCTTACATACATTGCATCTGAA-GGGCG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCG
EST: gi|7162427|gb|AW520049.1|AW520049
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCN                         NNNNNNCTAGCATCTCTCTAACATACATTGCAT
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCAT
EST: gi|84980240|gb|DW530589.1|DW530589
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|71766309|gb|DR964246.1|DR964246
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCTCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGG
EST: gi|31354494|gb|CD438851.1|CD438851
EST:     TACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTG
genomic: TACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCC-Ggtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTG
EST: gi|31353471|gb|CD437828.1|CD437828
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG